1 5' 3' | 2 5' 3' | 3 5' 3' |
...accgcgtttgcctctcacatacccacacagttcactgcacaaccgctagcaaccctcggatccgcttatgtgtttcgcttgcacgcgcatgctgatgcagACGGTAGTGCTGCAGTACAAGCTGCGCGGAGGCAAGTACGTACGTCACCACAACCGGCTAGACGTGCAGCCCACGGGGCGCTGGCTGGTGAACCAGATGC
species | Chlamydomonas reinhardtii |
transcript | EDO96965 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGCAGTGCGGGGAGGAGATCGACGTGGAGGGGCAGGGATACGTGGTGACG ACGGTAGTGCTGCAGTACAAGCTGCGCGGAGGCAAGTACGTACGTCACCACEST: gi|14239937|gb|BG858753.1|BG858753
genomic: CGCAGTGCGGGGAGGAGATCGACGTGGAGGGGCAGGGATACGTGGTGACGgtaggtcaac ... gctgatgcagACGGTAGTGCTGCAGTACAAGCTGCGCGGAGGCAAGTACGTACGTCACCAC
EST: CGCAGTGCGGGGAGGAGATCGACGTGGAGGGGCAGGGATACGTGGTGACG ACGGTAGTGCTGCAGTACAAGCTGCGCGGAGGCAAGTACGTACGTCACCACEST: gi|15372571|gb|BI531997.1|BI531997
genomic: CGCAGTGCGGGGAGGAGATCGACGTGGAGGGGCAGGGATACGTGGTGACGgtaggtcaac ... gctgatgcagACGGTAGTGCTGCAGTACAAGCTGCGCGGAGGCAAGTACGTACGTCACCAC
EST: CGCAGTGCGGGGAGGAGATCGACGTGGAGGGGCAGGGATACGTGGTGACG ACGGTAGTGCTGCAGTACAAGCTGCGCGGAGGCAAGTACGTACGTCACCACEST: gi|10773766|gb|AV624589.1|AV624589
genomic: CGCAGTGCGGGGAGGAGATCGACGTGGAGGGGCAGGGATACGTGGTGACGgtaggtcaac ... gctgatgcagACGGTAGTGCTGCAGTACAAGCTGCGCGGAGGCAAGTACGTACGTCACCAC
EST: CGCAGTGCGGGGAGGAGATCGACGTGGAGGGGCAGGGATACGTGGTGACG ACGGTAGTGCTGCAGTACAAGCTGCGCGGAGGCAAGTACGTACGTCACCAC
genomic: CGCAGTGCGGGGAGGAGATCGACGTGGAGGGGCAGGGATACGTGGTGACGgtaggtcaac ... gctgatgcagACGGTAGTGCTGCAGTACAAGCTGCGCGGAGGCAAGTACGTACGTCACCAC
ctagcaaccctcggatccgcttatgtgtttcgcttgcacgcgcatgctgatgcagACGGTAGTGCTGCAGTACAAGCTGCGCGGAGGCAAGTACGTACGTCACCACAACCGGCTAGACGTGCAGCCCACGGGGCGCTGGCTGGTGAACCAGATGC
tgctgat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accgcgtttgcctctcacatacccacacagttcactgcacaaccgctagcaaccctcggatccgcttatgtgtttcgcttgcacgcgcatgctgatgcagACGGTAGTGCTGCAGTACAAGCTGCGCGGAGGCAAGTACGTACGTCACCACAACCGGCTAGACGTGCAGCCCACGGGGCGCTGGCTGGTGAACCAGATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- -gcgtttg
- - - - - - - -cacatac
- - - - - - - - - - - ccacaca
- - - - - - - - - - - - - - - - - ctgcaca
- - - - - - - - - - - - - - - - - - - - - - - - gcaaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgcgc