1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtcgctggcatcggtagctttcatgcagccaacagctgtgactgcacgcctagctgcgtgatgaccgcaaggatgaaagcgcttcctcccactgccacagTGCTCAAAACCGGGCCCTGCGCCCGGCCCCGCTGACGGCCAGAACAACAACAACAAGCGAGGGTTAAAGCCTGGAAGTGGGGCGGGCAAGAGGGCGAAGC
species | Chlamydomonas reinhardtii |
transcript | EDO96965 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGCATCAGGGAGACTGGCGCGACCCTCGCGGAAGTCGGCGGTGGTCCAG TGCTCAAAACCGGGCCCTGCGCCCGGCCCCGCTGACGGCCAGAACAACAACEST: gi|15370259|gb|BI529685.1|BI529685
genomic: TGGCATCAGGGAGACTGGCGCGACCCTCGCGGAAGTCGGCGGTGGTCCAGgtgcgctggt ... actgccacagTGCTCAAAACCGGGCCCTGCGCCCGGCCCCGCTGACGGCCAGAACAACAAC
EST: TGGCATCAGGGAGACTGGCGCGACCCTCGCGGAAGTCGGCGGTGGTCCAG TGCTCAAAACCGGGCCCTGCGCCCGGCCCCGCTGACGGCCAGAACAACAACEST: gi|49459147|gb|BP087060.1|BP087060
genomic: TGGCATCAGGGAGACTGGCGCGACCCTCGCGGAAGTCGGCGGTGGTCCAGgtgcgctggt ... actgccacagTGCTCAAAACCGGGCCCTGCGCCCGGCCCCGCTGACGGCCAGAACAACAAC
EST: TGGCATCAGGGAGACTGGCGCGACCCTCGCGGAAGTCGGCGGTGGTCCAG TGCTCAAAACCGGGCCCTGCGCCCGGCCCCGCTGACGGCCAGAACAACAACEST: gi|14239937|gb|BG858753.1|BG858753
genomic: TGGCATCAGGGAGACTGGCGCGACCCTCGCGGAAGTCGGCGGTGGTCCAGgtgcgctggt ... actgccacagTGCTCAAAACCGGGCCCTGCGCCCGGCCCCGCTGACGGCCAGAACAACAAC
EST: TGGCATCAGGGAGACTGGCGCGACCCTCGCGGAAGTCGGCGGTGGTCCAG TGCTCAAAACCGGGCCCTGCGCCCGGCCCCGCTGACGGCCAGAACAACAACEST: gi|15372571|gb|BI531997.1|BI531997
genomic: TGGCATCAGGGAGACTGGCGCGACCCTCGCGGAAGTCGGCGGTGGTCCAGgtgcgctggt ... actgccacagTGCTCAAAACCGGGCCCTGCGCCCGGCCCCGCTGACGGCCAGAACAACAAC
EST: TGGCATCAGGGAGACTGGCGCGACCCTCGCGGAAGTCGGCGGTGGTCCAG TGCTCAAAACCGGGCCCTGCGCCCGGCCCCGCTGACGGCCAGAACAACAACEST: gi|10773766|gb|AV624589.1|AV624589
genomic: TGGCATCAGGGAGACTGGCGCGACCCTCGCGGAAGTCGGCGGTGGTCCAGgtgcgctggt ... actgccacagTGCTCAAAACCGGGCCCTGCGCCCGGCCCCGCTGACGGCCAGAACAACAAC
EST: TGGCATCAGGGAGACTGGCGCGACCCTCGCGGAAGTCGGCGGTGGTCCAG TGCTCAAAACCGGGCCCTGCGCCCGGCCCCGCTGACGGCCAGAACAACAAC
genomic: TGGCATCAGGGAGACTGGCGCGACCCTCGCGGAAGTCGGCGGTGGTCCAGgtgcgctggt ... actgccacagTGCTCAAAACCGGGCCCTGCGCCCGGCCCCGCTGACGGCCAGAACAACAAC
acgcctagctgcgtgatgaccgcaaggatgaaagcgcttcctcccactgccacagTGCTCAAAACCGGGCCCTGCGCCCGGCCCCGCTGACGGCCAGAACAACAACAACAAGCGAGGGTTAAAGCCTGGAAGTGGGGCGGGCAAGAGGGCGAAGC
cttcctcccactgcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgctggcatcggtagctttcatgcagccaacagctgtgactgcacgcctagctgcgtgatgaccgcaaggatgaaagcgcttcctcccactgccacagTGCTCAAAACCGGGCCCTGCGCCCGGCCCCGCTGACGGCCAGAACAACAACAACAAGCGAGGGTTAAAGCCTGGAAGTGGGGCGGGCAAGAGGGCGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - tcatgca
- - - - - - - - - - - - - -gccaaca
- - - - - - - - - - - - - - - - - - - - - - -acgccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtga