1 5' 3' | 2 5' 3' | 3 5' 3' |
...gggcctggagcagttcagattatcgttctctcacctccacgtgcggccatctccacgtgcggccatgcgagtcattcttgccgtctttctgtgactgcagGTGCAAGTGGTGACTCCGCCGCCTCGCTCGCTAGGCATCTACGCGCTGCCCCCCAACACGCAGTGCGGGGAGGAGATCGACGTGGAGGGGCAGGGATACG
species | Chlamydomonas reinhardtii |
transcript | EDO96965 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCCTGGAAGTGGGGCGGGCAAGAGGGCGAAGCAGCCGGGCCTCTACGAG GTGCAAGTGGTGACTCCGCCGCCTCGCTCGCTAGGCATCTACGCGCTGCCCEST: gi|15370259|gb|BI529685.1|BI529685
genomic: AGCCTGGAAGTGGGGCGGGCAAGAGGGCGAAGCAGCCGGGCCTCTACGAGgtaaggccga ... gtgactgcagGTGCAAGTGGTGACTCCGCCGCCTCGCTCGCTAGGCATCTACGCGCTGCCC
EST: AGCCTGGAAGTGGGGCGGGCAAGAGGGCGAAGCAGCCGGGCCTCTACGAG GTGCAAGTGGTGACTCCGCCGCCTCGCTCGCTAGGCATCTACGCGCTGCCCEST: gi|14239937|gb|BG858753.1|BG858753
genomic: AGCCTGGAAGTGGGGCGGGCAAGAGGGCGAAGCAGCCGGGCCTCTACGAGgtaaggccga ... gtgactgcagGTGCAAGTGGTGACTCCGCCGCCTCGCTCGCTAGGCATCTACGCGCTGCCC
EST: AGCCTGGAAGTGGGGCGGGCAAGAGGGCGAAGCAGCCGGGCCTCTACGAG GTGCAAGTGGTGACTCCGCCGCCTCGCTCGCTAGGCATCTACGCGCTGCCCEST: gi|15372571|gb|BI531997.1|BI531997
genomic: AGCCTGGAAGTGGGGCGGGCAAGAGGGCGAAGCAGCCGGGCCTCTACGAGgtaaggccga ... gtgactgcagGTGCAAGTGGTGACTCCGCCGCCTCGCTCGCTAGGCATCTACGCGCTGCCC
EST: AGCCTGGAAGTGGGGCGGGCAAGAGGGCGAAGCAGCCGGGCCTCTACGAG GTGCAAGTGGTGACTCCGCCGCCTCGCTCGCTAGGCATCTACGCGCTGCCCEST: gi|10773766|gb|AV624589.1|AV624589
genomic: AGCCTGGAAGTGGGGCGGGCAAGAGGGCGAAGCAGCCGGGCCTCTACGAGgtaaggccga ... gtgactgcagGTGCAAGTGGTGACTCCGCCGCCTCGCTCGCTAGGCATCTACGCGCTGCCC
EST: AGCCTGGAAGTGGGGCGGGCAAGAGGGCGAAGCAGCCGGGCCTCTACGAG GTGCAAGTGGTGACTCCGCCGCCTCGCTCGCTAGGCATCTACGCGCTGCCC
genomic: AGCCTGGAAGTGGGGCGGGCAAGAGGGCGAAGCAGCCGGGCCTCTACGAGgtaaggccga ... gtgactgcagGTGCAAGTGGTGACTCCGCCGCCTCGCTCGCTAGGCATCTACGCGCTGCCC
gccatctccacgtgcggccatgcgagtcattcttgccgtctttctgtgactgcagGTGCAAGTGGTGACTCCGCCGCCTCGCTCGCTAGGCATCTACGCGCTGCCCCCCAACACGCAGTGCGGGGAGGAGATCGACGTGGAGGGGCAGGGATACG
tctttctgt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggcctggagcagttcagattatcgttctctcacctccacgtgcggccatctccacgtgcggccatgcgagtcattcttgccgtctttctgtgactgcagGTGCAAGTGGTGACTCCGCCGCCTCGCTCGCTAGGCATCTACGCGCTGCCCCCCAACACGCAGTGCGGGGAGGAGATCGACGTGGAGGGGCAGGGATACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - tctctca
- - - - - - - - - - - - - - - - - - - acgtgcg