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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatttgatattttttggttttggtttgtctttgtttagcaaatttgagaatttactgataacgttttcttatatgttttataaaatttacagGCGCAGAAAGCAAGTGCTCGTATTAACAAATGGTCCAACACAATAAAATGATTCAAGATTTTGTTGAATCAACTATTAAATAATTTTGCAGCATAATATG

Basic information

species Arabidopsis thaliana
transcript AT5G65380.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86088225|gb|DR383984.1|DR383984
EST:     AAACCATGATCTTAAGTTTTATCACAATGAGATGTGACTGGGAAAAAGAG                         GCGCAGAAAGCAAGTGCTCGTATTAACAAATGGTCAAACACAATAAAATGA
genomic: AAACCATGATCTTAAGTTTTATCACAATGAGATGTGACTGGGAAAAAGAGgtagatttga ... aaatttacagGCGCAGAAAGCAAGTGCTCGTATTAACAAATGGTCCAACACAATAAAATGA
EST: gi|124824554|gb|EH909420.1|EH909420
EST:     TGACTGGG-AAAAGAG                         GCGCAGAAAGCAAGTGCTCGTATTAACAAATGGTCCAACACAATAAAATGA
genomic: TGACTGGGAAAAAGAGgtagatttga ... aaatttacagGCGCAGAAAGCAAGTGCTCGTATTAACAAATGGTCCAACACAATAAAATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaaatttgagaatttactgataacgttttcttatatgttttataaaatttacagGCGCAGAAAGCAAGTGCTCGTATTAACAAATGGTCCAACACAATAAAATGATTCAAGATTTTGTTGAATCAACTATTAAATAATTTTGCAGCATAATATG
                  tgataac  putative branch site (score: 2)
                  tgataacgttttctta  TA-rich tract