1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaatatgtgcatgtcataagcatatatttttaaaatatgtttaatagtttattggctgatcaatgtttgaacaagtcattttttttttttgggttattagGTGACTGCGTATGCGGCAGCGGTTGCATTGGTGGTTCATATTTTAGTGTGTTGGTTGTTCGTGGACGGGCTTAAACTAGGAGTCGTGGGGACTGTAGCTA
species | Arabidopsis thaliana |
transcript | AT5G65380.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTTGTCTTTTCCCCTTCAACGTTTCCTTCAGTGCCAGCTCAAAAACCGA GTGACTGCGTATGCGGCAGCGGTTGCATTGGTGGTTCATATTTTAGTGTGTEST: gi|301501939|gb|HO207479.1|HO207479
genomic: CTTTGTCTTTTCCCCTTCAACGTTTCCTTCAGTGCCAGCTCAAAAACCGAgtatgtattc ... gggttattagGTGACTGCGTATGCGGCAGCGGTTGCATTGGTGGTTCATATTTTAGTGTGT
EST: CTTTGTCTTTTCCCCTTCAACGTTTCCTTCAGTGCCAGCTCAAAAACCGA GTGACTGCGTATGCGGCAGCGGTTGCATTGGTGGTTCA
genomic: CTTTGTCTTTTCCCCTTCAACGTTTCCTTCAGTGCCAGCTCAAAAACCGAgtatgtattc ... gggttattagGTGACTGCGTATGCGGCAGCGGTTGCATTGGTGGTTCA
agtttattggctgatcaatgtttgaacaagtcattttttttttttgggttattagGTGACTGCGTATGCGGCAGCGGTTGCATTGGTGGTTCATATTTTAGTGTGTTGGTTGTTCGTGGACGGGCTTAAACTAGGAGTCGTGGGGACTGTAGCTA
ggctgat putative branch site (score: 4)
tcattttttttttttg putative PPT
attttttttttttggg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatatgtgcatgtcataagcatatatttttaaaatatgtttaatagtttattggctgatcaatgtttgaacaagtcattttttttttttgggttattagGTGACTGCGTATGCGGCAGCGGTTGCATTGGTGGTTCATATTTTAGTGTGTTGGTTGTTCGTGGACGGGCTTAAACTAGGAGTCGTGGGGACTGTAGCTA
- - - - - - - - -aagcata
- - - - - - - - - - - - - - - -aaaatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaag