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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAATCACTCAAGCTTTCGCTGGTCATCTCGGCGATCTTGAACTCGCCGCCATATCCATCGTTAATAACGTCACCGTTGGCTTCAACTTTGGCCTCTTGgtatagtatctacacaatcttgattaaaatgtttttttccttcatttttctaaaaaataataatatgagtatatgtaaatggtttag

Basic information

species Arabidopsis thaliana
transcript AT5G65380.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502898|gb|HO208438.1|HO208438
EST:     TCAACTTTGGCCTCTTG                         CTTGGAATGGCGAGTGCGTTGGAAACGCTGTGTGGACAAGCGTTTGGAGCG
genomic: TCAACTTTGGCCTCTTGgtatagtatc ... aatggtttagCTTGGAATGGCGAGTGCGTTGGAAACGCTGTGTGGACAAGCGTTTGGAGCG
EST: gi|301501939|gb|HO207479.1|HO207479
EST:     CCATATCCATCGTTAATAACGTCACCGTTGGCTTCAACTTTGGCCTCTTG                         CTTGGAATGGCGAGTGCGTTGGAAACGCTGTGTGGACAAGCGTTTGGAGCG
genomic: CCATATCCATCGTTAATAACGTCACCGTTGGCTTCAACTTTGGCCTCTTGgtatagtatc ... aatggtttagCTTGGAATGGCGAGTGCGTTGGAAACGCTGTGTGGACAAGCGTTTGGAGCG