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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAATGACCCAAAGATCGCCGGAATTTTGTGGGTTGGTTATCCCGGAGAAGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagactctgtttcaaaccggtttttgtaattgcaaatttgaataaaccggttttggttatgtag

Basic information

species Arabidopsis thaliana
transcript AT5G64570.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163987574|gb|ES064382.1|ES064382
EST:     AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA                         GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTA
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTA
EST: gi|164228238|gb|EL979059.1|EL979059
EST:     CGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA                         GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
genomic: CGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: gi|47829997|gb|CK119681.1|CK119681
EST:     AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA                         GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: gi|125017138|gb|EL089407.1|EL089407
EST:     TATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA                         GTGGGAAATTAC
genomic: TATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTAC
EST: gi|164138792|gb|ES200260.1|ES200260
EST:     AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA                         GTGGGAA-TTACCGATGACGTGGTATCCACAGT
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGT
EST: gi|164140138|gb|ES055027.1|ES055027
EST:     GATATCATCTTTGGCCGTTATAATCCAA                         GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
genomic: GATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: gi|164032971|gb|ES194353.1|ES194353
EST:     TCTTTGGCCGTTATAATCCAA                         GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
genomic: TCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: gi|164016682|gb|ES210136.1|ES210136
EST:     TCTTTGGCCGTTTATAATCCAA                         GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
genomic: TCTTTGGCCG-TTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: gi|164063607|gb|ES187712.1|ES187712
EST:     CGCCATTGCTGATATCATCTTTTGGCCGTTATAATCCAA                         GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
genomic: CGCCATTGCTGATATCATC-TTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: gi|116442593|gb|EG485185.1|EG485185
EST:     AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA                         GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: gi|47830924|gb|CK120608.1|CK120608
EST:     AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA                         GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: gi|86088050|gb|DR383809.1|DR383809
EST:     TTGCTGATATCATCTTTGGCCGTTATAATCCAA                         GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
genomic: TTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: gi|164227940|gb|ES034853.1|ES034853
EST:     CCATTGCTGATATCATCTTTGGCCGTTATAATCCAA                         GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
genomic: CCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: gi|125103119|gb|EL157637.1|EL157637
EST:     AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA                         GTGGGAAATTACCGA
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGA
EST: gi|116467502|gb|EG510094.1|EG510094
EST:     AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA                         GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: gi|125291109|gb|EL305194.1|EL305194
EST:     AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA                         GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGA
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGA
EST: gi|124864563|gb|EH949000.1|EH949000
EST:     AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA                         GTGGGAAATTACCGATGACGTAGGTATCCACAGTCGTATGTAGAGAAAGTT
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGT-GGTATCCACAGTCGTATGTAGAGAAAGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGAATGACCCAAAGATCGCCGGAATTTTGTGGGTTGGTTATCCCGGAGAAGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagactctgtttcaaaccggtttttgtaattgcaaatttgaataaaccggttttggttatgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT