1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagagactctgtttcaaaccggtttttgtaattgcaaatttgaataaaccggttttggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTCCGATGACAATAATGAACATGAGACCCGATAAAGCAAGCGGGTATCCGGG
species | Arabidopsis thaliana |
transcript | AT5G64570.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTAEST: gi|164228238|gb|EL979059.1|EL979059
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTA
EST: CGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTCEST: gi|47829997|gb|CK119681.1|CK119681
genomic: CGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTCEST: gi|125017138|gb|EL089407.1|EL089407
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: TATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA GTGGGAAATTACEST: gi|164138792|gb|ES200260.1|ES200260
genomic: TATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTAC
EST: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA GTGGGAA-TTACCGATGACGTGGTATCCACAGTEST: gi|164140138|gb|ES055027.1|ES055027
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGT
EST: GATATCATCTTTGGCCGTTATAATCCAA GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTCEST: gi|164032971|gb|ES194353.1|ES194353
genomic: GATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: TCTTTGGCCGTTATAATCCAA GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTCEST: gi|164016682|gb|ES210136.1|ES210136
genomic: TCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: TCTTTGGCCGTTTATAATCCAA GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTCEST: gi|164063607|gb|ES187712.1|ES187712
genomic: TCTTTGGCCG-TTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: CGCCATTGCTGATATCATCTTTTGGCCGTTATAATCCAA GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTCEST: gi|116442593|gb|EG485185.1|EG485185
genomic: CGCCATTGCTGATATCATC-TTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTCEST: gi|47830924|gb|CK120608.1|CK120608
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTCEST: gi|86088050|gb|DR383809.1|DR383809
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: TTGCTGATATCATCTTTGGCCGTTATAATCCAA GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTCEST: gi|164227940|gb|ES034853.1|ES034853
genomic: TTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: CCATTGCTGATATCATCTTTGGCCGTTATAATCCAA GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTCEST: gi|125103119|gb|EL157637.1|EL157637
genomic: CCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA GTGGGAAATTACCGAEST: gi|116467502|gb|EG510094.1|EG510094
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGA
EST: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTCEST: gi|125291109|gb|EL305194.1|EL305194
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTC
EST: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA GTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAEST: gi|124864563|gb|EH949000.1|EH949000
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGA
EST: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAA GTGGGAAATTACCGATGACGTAGGTATCCACAGTCGTATGTAGAGAAAGTT
genomic: AGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAgtaagagact ... ggttatgtagGTGGGAAATTACCGATGACGT-GGTATCCACAGTCGTATGTAGAGAAAGTT
tttcaaaccggtttttgtaattgcaaatttgaataaaccggttttggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTCCGATGACAATAATGAACATGAGACCCGATAAAGCAAGCGGGTATCCGGG
aaatttgaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagactctgtttcaaaccggtttttgtaattgcaaatttgaataaaccggttttggttatgtagGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTCCGATGACAATAATGAACATGAGACCCGATAAAGCAAGCGGGTATCCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG