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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaatctaaaagctaaaaagacattttccagtgttttaactgtttttgtcaattgtgtatgtgatgttgtggtttatttggttaatccggttcaatggtactaagttcgggttgggtacaacatttggttagaccaaatacatttttgagtgttttaagtaactttttttgtgcgtttgttttgatggagtagGTGACTCAACAAGATATGGATGATACGTATCAACCACCGTTCAAGAGTTGTGTGGTTGATGGGAATGTGGCGAGTGTTATGTGTTCTTACAATCAAGTTA

Basic information

species Arabidopsis thaliana
transcript AT5G64570.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125236539|gb|EL250624.1|EL250624
EST:     CGTTACAGTTTCAACGCCGTG                         GTGACTCAACAAGATATGGATGATACGTATCAACCACCGTTCAAGAGTTGT
genomic: CGTTACAGTTTCAACGCCGTGgtaaaaatct ... gatggagtagGTGACTCAACAAGATATGGATGATACGTATCAACCACCGTTCAAGAGTTGT
EST: gi|164034849|gb|ES126409.1|ES126409
EST:     CGATGTCGATAATTGGAAAGGCGTAGAACGTTACTAGTTTCAACGCCGTG                         GTGACTCAACAAGATATGGA
genomic: CGATGTCGATAATTGGAAAGGCGTAGAACGTTAC-AGTTTCAACGCCGTGgtaaaaatct ... gatggagtagGTGACTCAACAAGATATGGA
EST: gi|164143926|gb|ES160436.1|ES160436
EST:     TGGAAAGGCGTAGAACGTTACAGTTTCAACGCCGTG                         GTGACTCAACAAGATATGGATGATACGTATCAACCACCGTTCAAGAGTTGT
genomic: TGGAAAGGCGTAGAACGTTACAGTTTCAACGCCGTGgtaaaaatct ... gatggagtagGTGACTCAACAAGATATGGATGATACGTATCAACCACCGTTCAAGAGTTGT
EST: gi|116468744|gb|EG511336.1|EG511336
EST:     ACGATGTCGATAATTGGAAAGGCGTAGAACGTTACAGTTTCAACGCCGTG                         GTGACTCAACAAGATATGGATGATACGTATCAACCACCGTTCAAGAGTTGT
genomic: ACGATGTCGATAATTGGAAAGGCGTAGAACGTTACAGTTTCAACGCCGTGgtaaaaatct ... gatggagtagGTGACTCAACAAGATATGGATGATACGTATCAACCACCGTTCAAGAGTTGT
EST: gi|125234178|gb|EL248263.1|EL248263
EST:     ACGATGTCGATAATTGGAAAGGCGTAGAACGTTACAGTTACAACGCCGTG                         GTGACTCAACAAGATATGGATG
genomic: ACGATGTCGATAATTGGAAAGGCGTAGAACGTTACAGTTTCAACGCCGTGgtaaaaatct ... gatggagtagGTGACTCAACAAGATATGGATG
EST: gi|164078794|gb|ES046688.1|ES046688
EST:     ACGATGTCGATAATTGGAAAGGCGTAGAACGTTACAGTTTCAACGCCGTG                         GTGACTCAACAAGATATGGATGATACGTATCAACCACCGTTCAAGAG
genomic: ACGATGTCGATAATTGGAAAGGCGTAGAACGTTACAGTTTCAACGCCGTGgtaaaaatct ... gatggagtagGTGACTCAACAAGATATGGATGATACGTATCAACCACCGTTCAAGAG
EST: gi|125266368|gb|EL280453.1|EL280453
EST:     CGATGTCGATAATTTGGAAAGGCGTAGAACGTTACAGTTTCAACGCCGTG                         GTGACTCAACAAGATATGGATGATACGTATCAACCACCGTTCAAG
genomic: CGATGTCGATAA-TTGGAAAGGCGTAGAACGTTACAGTTTCAACGCCGTGgtaaaaatct ... gatggagtagGTGACTCAACAAGATATGGATGATACGTATCAACCACCGTTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatttttgagtgttttaagtaactttttttgtgcgtttgttttgatggagtagGTGACTCAACAAGATATGGATGATACGTATCAACCACCGTTCAAGAGTTGTGTGGTTGATGGGAATGTGGCGAGTGTTATGTGTTCTTACAATCAAGTTA
              ttttaagtaacttttt  TA-rich tract