1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttttactttacaacgcattgtgtatcaggatttctgaagaatcataagtttataaccagttctcatttgcttttatctgtgtttattagGCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACACCAAGACAAGCTGCTTCTCCTTATACACCACAGCAACTCCCATATGATC
species | Arabidopsis thaliana |
transcript | AT5G64540.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTCAGCTGGCAAGGAAAATATGCTGGCAAATAGTCCTTGTACACCAAAG GCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACAEST: gi|116432288|gb|EG474880.1|EG474880
genomic: CTTCAGCTGGCAAGGAAAATATGCTGGCAAATAGTCCTTGTACACCAAAGgtttttactt ... tgtttattagGCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACA
EST: CTTCAGCTGGCAAGGAAAATATGCTGGCAAATAGTCCTTGTACACCAAAG GCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACAEST: gi|116432275|gb|EG474867.1|EG474867
genomic: CTTCAGCTGGCAAGGAAAATATGCTGGCAAATAGTCCTTGTACACCAAAGgtttttactt ... tgtttattagGCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACA
EST: CTTCAGCTGGCAAGGAAAATATGCTGGCAAATAGTCCTTGTACACCAAAG GCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACAEST: gi|116432283|gb|EG474875.1|EG474875
genomic: CTTCAGCTGGCAAGGAAAATATGCTGGCAAATAGTCCTTGTACACCAAAGgtttttactt ... tgtttattagGCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACA
EST: CTTCAGCTGGCAAGGAAAATATGCTGGCAAATAGTCCTTGTACACCAAAG GCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACAEST: gi|116432296|gb|EG474888.1|EG474888
genomic: CTTCAGCTGGCAAGGAAAATATGCTGGCAAATAGTCCTTGTACACCAAAGgtttttactt ... tgtttattagGCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACA
EST: CTTCAGCTGGCAAGGAAAATATGCTGGCAAATAGTCCTTGTACACCAAAG GCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACAEST: gi|116432277|gb|EG474869.1|EG474869
genomic: CTTCAGCTGGCAAGGAAAATATGCTGGCAAATAGTCCTTGTACACCAAAGgtttttactt ... tgtttattagGCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACA
EST: CTTCAGCTGGCAAGGAAAATATGCTGGCAAATAGTCCTTGTACACCAAAG GCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACAEST: gi|116432286|gb|EG474878.1|EG474878
genomic: CTTCAGCTGGCAAGGAAAATATGCTGGCAAATAGTCCTTGTACACCAAAGgtttttactt ... tgtttattagGCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACA
EST: CTTCAGCTGGCAAGGAAAATATGCTGGCAAATAGTCCTTGTACACCAAAG GCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACAEST: gi|116432290|gb|EG474882.1|EG474882
genomic: CTTCAGCTGGCAAGGAAAATATGCTGGCAAATAGTCCTTGTACACCAAAGgtttttactt ... tgtttattagGCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACA
EST: CTTCAGCTGGCAAGGAAAATATGCTGGCAAATAGTCCTTGTACACCAAAG GCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACA
genomic: CTTCAGCTGGCAAGGAAAATATGCTGGCAAATAGTCCTTGTACACCAAAGgtttttactt ... tgtttattagGCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACA
tgaagaatcataagtttataaccagttctcatttgcttttatctgtgtttattagGCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACACCAAGACAAGCTGCTTCTCCTTATACACCACAGCAACTCCCATATGATC
ttataac putative branch site (score: 2)
aatcataagtttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttactttacaacgcattgtgtatcaggatttctgaagaatcataagtttataaccagttctcatttgcttttatctgtgtttattagGCTGCTAAACCTTTCAAACTGCAAGCTTCTGCTGAACCATTCATCCTCACACCAAGACAAGCTGCTTCTCCTTATACACCACAGCAACTCCCATATGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT