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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTATCCAGGACGATCAGCACGTTCTTCAATCTTCCGGAGTCAGCTCAAGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtctttcgctctttattgtttacatatttgtgagattagaatcggtaagaacatcactgacttacttaagaaacattgcatgtgatattccacaat...

Basic information

species Arabidopsis thaliana
transcript AT5G64540.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116432280|gb|EG474872.1|EG474872
EST:     AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAG                         GAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
genomic: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtcttt ... gattttgcagGAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
EST: gi|116432288|gb|EG474880.1|EG474880
EST:     AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAG                         GAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
genomic: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtcttt ... gattttgcagGAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
EST: gi|116432275|gb|EG474867.1|EG474867
EST:     AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAG                         GAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
genomic: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtcttt ... gattttgcagGAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
EST: gi|116432283|gb|EG474875.1|EG474875
EST:     AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAG                         GAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
genomic: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtcttt ... gattttgcagGAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
EST: gi|116432296|gb|EG474888.1|EG474888
EST:     AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAG                         GAAACCGCTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
genomic: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtcttt ... gattttgcagGAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
EST: gi|116432277|gb|EG474869.1|EG474869
EST:     AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAG                         GAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
genomic: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtcttt ... gattttgcagGAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
EST: gi|116432286|gb|EG474878.1|EG474878
EST:     AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAG                         GAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
genomic: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtcttt ... gattttgcagGAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
EST: gi|116432290|gb|EG474882.1|EG474882
EST:     AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAG                         GAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG
genomic: AGAAGACTACAGAGTGTAGCAGCCCTATAAGCGATTCAGGACCTAACCAGgttcgtcttt ... gattttgcagGAAACCACTCGCTCTCAGCAATCTTCTTCAGCTGGCAAGGAAAATATGCTG