Sequence
atgc intronic sequence ATGC exonic sequenceAATTTTACTAACCTCAACCTCTGAAGTGTATGGAGATCCTCTCATCCACCCTCAACCAGAGAGCTACTGGGGAAATGTCAACCCTATTGgtaaacctcaaatgttctcatcttatagaggaatcttcttgcatttcagtttttacagctttgtaaacttaacctggttgctattatcaaaag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G59290.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 7
AATTTTACTAACCTCAACCTCTGAAGTGTATGGAGATCCTCTCATCCACCCTCAACCAGAGAGCTACTGGGGAAATGTCAACCCTATTGgtaaacctcaaatgtt-ctcatcttatagaggaatcttcttgcatttcagttt--ttacagctttgtaaacttaacctggttgctattatcaaaag
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GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgttctatcacaaatacactacatttatcctatattttcttaatctagtgcaaagttcacttacttgaattgatttacttcatcag---
upper sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 7
AATTTTACTAACCTCAACCTCTGAAGTGTATGGAGATCCTCTCATCCACCCTCAACCAGAGAGCTACTGGGGAAATGTCAACCCTATTGgtaaac----ctcaaatgttctcatcttatagaggaatcttcttgcatttca--gtttttacagct----ttgtaaacttaacctggttgctattatcaaaag
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GATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGCTATTGGGGCAATGTGAACCCTATTGgtatatgcttttctctttgtctcaatctgtttcttgggcttcttaaatgaaattatatcttctgttatgattgtgaaagatatctgtgcagtataaacca---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124925132|gb|EL003153.1|EL003153EST: CTCATCCACCCTCAACCAGAGAGCTACTGGGGAAATGTCAACCCTATTG GGGTTCGGAGTTGCTATGACGAAGGCAAGCGGGTAGCCGAAACCTTGATGT
genomic: CTCATCCACCCTCAACCAGAGAGCTACTGGGGAAATGTCAACCCTATTGgtaaacctca ... ttatcaaaagGGGTTCGGAGTTGCTATGACGAAGGCAAGCGGGTAGCCGAAACCTTGATGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTTTACTAACCTCAACCTCTGAAGTGTATGGAGATCCTCTCATCCACCCTCAACCAGAGAGCTACTGGGGAAATGTCAACCCTATTGgtaaacctcaaatgttctcatcttatagaggaatcttcttgcatttcagtttttacagctttgtaaacttaacctggttgctattatcaaaag
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