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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgttcgtgtgaatatagatatattctcatatcaccttcatataatcagaatcgttagttactgatctaatatgtttatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G59290.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G157772_T01 (Zea mays), 5'ss of exon 2
ATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgttcgtgtgaatatagatatattctca-tatcaccttcatataatcagaatcgttagttactgatctaatatgtttatg-cag
|||| | ||||||  |  |  | || ||||| |  || || || |||||||| ||||| || || |||||||||||  ||||||||||||||||  |    |     | |  ||      |   |  ||   ||| |     | | || |      | | || ||| | |  |||
ATGTCATCGAGCCGCTTCTTGTAGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctacatctctgctgcatgagaggtggtatattttcatagtttttcttgatattggtgtttgtgat-tgtctgtaacag

upper sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 4
ATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgttcgtgtgaatatagatatattctca-tatcaccttcatataatcagaatcgttagttactgatctaatatgtttatg-cag
|||| ||||||||  |  |  | || ||||| |  || || || |||||||| ||||| || || |||||||||||  ||||||||||||||||  |   ||     | || ||      |   |  ||   ||| |       | || |      | | || ||| | |  |||
ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatgctagatctctgttacatgagaggtggtatattttcatagtttttcctgatattggtgtttgtgat-tgtctgtaacag

upper sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 6
ATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgt----tcgtgtgaatatagatatattctcatatcaccttcatataatcagaatcgttagttactgatctaatatgtttatgcag-----------------
|||| || |||||||| |||||||||||||||| ||| ||||||||||| || |||||||||||||| |||||||||||||| || || |||||    |  || || | |   | | |      ||   | |  | ||||   ||    || ||| | || | | |||||   | |                  
ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagttttgagagtctgcttttgtctaataattggcct--tttaattgaaaatcatacttattcatgtcaaatgttggagaaattacattctacttcatt

upper sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA15G04500.2 (Glycine max), 5'ss of exon 6
ATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgttcg---tgtgaatatagatatattctcatatcacct--tcatataatcagaatcgttagttactgatctaatatgtttatgcag--------------
|||| || |||||||| |||||||||||||||| ||| ||||||||||| || |||||||||||||| |||||||||||||| || || |||||      || || | |   | | |     ||  |  |   | |  |||   ||    || ||| |||| | |  |||| | | |               
ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttgagagtctgcttttgtatatctaataattggcctttcaattgaaaatcatacttattgatgtcaactgttgaagaaattgcattctacttc

upper sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 5
ATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgttcgtgtgaatatagatatattctcatatcaccttcatataatcagaatc-gttagttactgatctaatatgtttat-gcag------------------
|||| || ||||  |||||||| ||||||||||  || || |||||||| || ||||| ||||| ||||||||||||||||||||||| |||||  | ||   || |  | || | | ||||  |  |||| ||    ||  | || || |    |  | || | ||| | |||                   
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtgggggttcttagat-tctacttttatatttctgtcatttaccatgatcctgtcagctgtctacatgatttatttcttgcacaggagtagttttagttcc

upper sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 5
ATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgttcg--tgtgaatatagatatattctcatatcaccttcatataatcagaatcgttagttactgatctaatatgtttatgcag-----------------
|||| || || ||||||  ||| |||||||||| ||| ||||||||||| || ||||| |||||||| ||||||||||| || || || |||||     | ||| | | | | | |    || |||   || | |  |  | ||    |  || |  ||| |  || | | |                    
ATGTCACTGAACCTTTGACGATTGAGGTTGATCAGATCTACCATCTTGCGTGCCCTGCATCTCCTATTTTCTACAAATATAATCCCGTGAAGgtatagttttgagtcttgttttgtgtatatttcattatcttttgcttggcatgcaaacatatttttctcaactgataaaggtttttcttttaacattcat

upper sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 4
ATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgttcgtgtgaatatagatatattctcatatcaccttcatataatcagaatc-gttagttactgatctaatatgtttat-gcag------------------
|||| || ||||  |||||||| ||||||||||  || || |||||||| || || || ||||| || |||||||||||||||||||| |||||  | ||   || || | ||   | ||||  |  |||| ||    ||  | || || |    |  | || | ||| | |||                   
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAGgtgggggttcgtagag-tctacctttatatttctgtcatttaccatgatcctgtcagctgtctacatgatttatttcttgcacagaagtggctttaggtct

upper sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 5
ATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgttcg--tgtgaatatagatatattctcatatcaccttcatataatcagaat-----cgttagttactgatctaatat-gtttatgcag-----------
|||| || || ||||||  ||| |||||||||| ||| ||||||||||| || || || |||||||| ||||||||||| || ||||| |||||     | ||| | | | | | |    || |||   |  | | || || ||     | |   || || | || |||  | || |||             
ATGTCACTGAACCTTTGACGATTGAGGTTGATCAGATCTACCATCTTGCATGCCCCGCATCTCCTATTTTCTACAAATATAATCCTGTGAAGgtatagttttgagtcttgttttgtctatatttcattatattttgattagcatacaaacatatttttctcagctgataaaggttttgcttttaacattcat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125256603|gb|EL270688.1|EL270688
EST:     CAAATACAACCCTGTTAAG                         GCAATCAAGACCAATGTGATTGGTACACTCAACATGCTCGGTCTTGCCAAG
genomic: CAAATACAACCCTGTTAAGgttcgtgtga ... gtttatgcagACAATCAAGACCAATGTGATTGGTACACTCAACATGCTCGGTCTTGCCAAG
EST: gi|86047698|gb|DR343453.1|DR343453
EST:     ATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAG                         ACAATCAAGACCAATGTGATTGGTACACTCAACATGCTC
genomic: ATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgttcgtgtga ... gtttatgcagACAATCAAGACCAATGTGATTGGTACACTCAACATGCTC
EST: gi|124884979|gb|EH963881.1|EH963881
EST:     TCTTGCTTGTCCTGCCTCTCCTATCGTTCTACAAATACAACCCTGTTAAG                         ACAATCAAGACCAATGTGAATTGGTACACTCAACATGCTCGGTCTTGCCAA
genomic: TCTTGCTTGTCCTGCCTCTCCTATC-TTCTACAAATACAACCCTGTTAAGgttcgtgtga ... gtttatgcagACAATCAAGACCAATGTGA-TTGGTACACTCAACATGCTCGGTCTTGCCAA