1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttgtatacaaaattgacatgcttttcaagtttgatcatatttttgaaggtttcgttttattcttcagGTGGTTGTTGCTGATAACTATTTCACTGGCTCAAAAGAAAACCTCAAGAAGTGGATCGGTCACCCCAGGTTTGAACTTATTCGTCACG
species | Arabidopsis thaliana |
transcript | AT5G59290.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATAAGCTTATGGAAAATGAGAAGAATGAG GTGGTTGTTGCTGATAACTATTTCACTGGCTCAAAAGAAAACCTCAAGAAGEST: gi|86047698|gb|DR343453.1|DR343453
genomic: GATAAGCTTATGGAAAATGAGAAGAATGAGgtttgtatac ... tattcttcagGTGGTTGTTGCTGATAACTATTTCACTGGCTCAAAAGAAAACCTCAAGAAG
EST: TCATTGGTTCTCACTTGGTTGATAAGCTTATGGAAAATGAGAAGAATGAG GTGGTTGTTGCTGATAACTATTTCACTGGCTCAAAAGAAAACCTCAAGAAGEST: gi|124781288|gb|EH871231.1|EH871231
genomic: TCATTGGTTCTCACTTGGTTGATAAGCTTATGGAAAATGAGAAGAATGAGgtttgtatac ... tattcttcagGTGGTTGTTGCTGATAACTATTTCACTGGCTCAAAAGAAAACCTCAAGAAG
EST: CACTTGGTTGATAAGCTTATGGAAAATGAGAAGAATGAG GTGGTTGTTGCTGATAACTATTTCACTGGCTCAAAAGAAAACCTCAAGAAG
genomic: CACTTGGTTGATAAGCTTATGGAAAATGAGAAGAATGAGgtttgtatac ... tattcttcagGTGGTTGTTGCTGATAACTATTTCACTGGCTCAAAAGAAAACCTCAAGAAG
ttgacatgcttttcaagtttgatcatatttttgaaggtttcgttttattcttcagGTGGTTGTTGCTGATAACTATTTCACTGGCTCAAAAGAAAACCTCAAGAAGTGGATCGGTCACCCCAGGTTTGAACTTATTCGTCACG
tttcgttttattcttc CT-rich tract
tttgatcatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtatacaaaattgacatgcttttcaagtttgatcatatttttgaaggtttcgttttattcttcagGTGGTTGTTGCTGATAACTATTTCACTGGCTCAAAAGAAAACCTCAAGAAGTGGATCGGTCACCCCAGGTTTGAACTTATTCGTCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA