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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcactcactaaatcaccttcctttcatgtatcaaccattcaagtattctagctcctcgtcttattctacatctctgttgttttcttcagATTCCGTCTCATGTTTTAATGGGGATTCCACATGGAGCTGCTTCTCCAAAGGAAACAACTTCGCTTACCCCTCTTGGTGACGCTTGTTCACGACATGATC

Basic information

species Arabidopsis thaliana
transcript AT5G59010.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064781|gb|DR360538.1|DR360538
EST:     ATGTGAAATCTCTCGTGTCCTCACTCGCTCCTCTTCAGAAA-AAACTGAT                         ATTCCGTCTCATGGTTTAATGGGGATTCTACATGGAGCTGCTTCTCCAAAG
genomic: ATGTGAAATCTCTCGTGTCCTCACTCGCTCCTCTTCAGAAAGAAACTGATgtatgcactc ... ttttcttcagATTCCGTCTCATGTTTTAATGGGGATTCCACATGGAGCTGCTTCTCCAAAG
EST: gi|164067265|gb|ES170024.1|ES170024
EST:     CACTCGNTCCTCTTCAGAAAGAAACTGAT                         ATTCCGTCTCATGTTTTAATGGGGATTCCACATGGAGCTGCTTCTCCAAAG
genomic: CACTCGCTCCTCTTCAGAAAGAAACTGATgtatgcactc ... ttttcttcagATTCCGTCTCATGTTTTAATGGGGATTCCACATGGAGCTGCTTCTCCAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattcaagtattctagctcctcgtcttattctacatctctgttgttttcttcagATTCCGTCTCATGTTTTAATGGGGATTCCACATGGAGCTGCTTCTCCAAAGGAAACAACTTCGCTTACCCCTCTTGGTGACGCTTGTTCACGACATGATC
                                    tctctgttgttttctt  CT-rich tract
                          ttattcta  TA-rich tract