1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtgcaccaaacatggctcaacttctcttgggaggaagttcttgatcttttagcttcttctccttatcccagaaaatgttgataaagttctgtatgctctaccattgttctgcagGCGCTTGATCTGATTCGTGGGAAGAATTTCCTGATGCTGATGGACTCGTGTCTAGATGGCCATTTCTCAAACGATGATGGAACCGATTTGGTTCGTTTAG
species | Arabidopsis thaliana |
transcript | AT5G59010.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAACGCTGTTGCTAGATCTTCTCAGCGGCAAACACATACCACCAAGCCAT GCGCTTGATCTGATTCGTGGGAAGAATTTCCTGATGCTGATGGACTCGTGTEST: gi|116472022|gb|EG514614.1|EG514614
genomic: GAACGCTGTTGCTAGATCTTCTCAGCGGCAAACACATACCACCAAGCCATgtaagtgcac ... tgttctgcagGCGCTTGATCTGATTCGTGGGAAGAATTTCCTGATGCTGATGGACTCGTGT
EST: GAACGCTGTTGCTAGATCTTCTCAGCGGCAAACACATACCACCAAGCCAT GCGCTTGATCTGATTCGTGGGAAGAATTTCCTGATGCTGATGGACTCGTGT
genomic: GAACGCTGTTGCTAGATCTTCTCAGCGGCAAACACATACCACCAAGCCATgtaagtgcac ... tgttctgcagGCGCTTGATCTGATTCGTGGGAAGAATTTCCTGATGCTGATGGACTCGTGT
tccttatcccagaaaatgttgataaagttctgtatgctctaccattgttctgcagGCGCTTGATCTGATTCGTGGGAAGAATTTCCTGATGCTGATGGACTCGTGTCTAGATGGCCATTTCTCAAACGATGATGGAACCGATTTGGTTCGTTTAG
tgttgat putative branch site (score: 4)
ttgttct putative PPT
aaaatgttgataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgcaccaaacatggctcaacttctcttgggaggaagttcttgatcttttagcttcttctccttatcccagaaaatgttgataaagttctgtatgctctaccattgttctgcagGCGCTTGATCTGATTCGTGGGAAGAATTTCCTGATGCTGATGGACTCGTGTCTAGATGGCCATTTCTCAAACGATGATGGAACCGATTTGGTTCGTTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA