1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcagttactgatttgagatgcaatggcgtcaagttatgtgtttgctgtttgacaaagttatgatattgatctgatatatggatgtgcgtttattaatctcttaagGGAGAGTGATTCCGGAGAGTGTGGTCTACAGCTTCGGAACGCTGTTGCTAGATCTTCTCAGCGGCAAACACATACCACCAAGCCAT
species | Arabidopsis thaliana |
transcript | AT5G59010.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGTTACAGTACAAATTTGGCTTTCACACCTCCTGAATACCTAAGAACAG GGAGAGTGATTCCGGAGAGTGTGGTCTACAGCTTCGGAACGCTGTTGCTAGEST: gi|125323635|gb|EL337717.1|EL337717
genomic: GAGTTACAGTACAAATTTGGCTTTCACACCTCCTGAATACCTAAGAACAGgtcagttact ... atctcttaagGGAGAGTGATTCCGGAGAGTGTGGTCTACAGCTTCGGAACGCTGTTGCTAG
EST: GAGTTACAGTACAAATTTGGCTTTCACACCTCCTGAATACCTAAGAACAG GGAGAGTGATTCEST: gi|116472022|gb|EG514614.1|EG514614
genomic: GAGTTACAGTACAAATTTGGCTTTCACACCTCCTGAATACCTAAGAACAGgtcagttact ... atctcttaagGGAGAGTGATTC
EST: GAGTTACAGTACAAATTTGGCTTTCACACCTCCTGAATACCTAAGAACAG GGAGAGTGATTCCGGAGAGTGTGGTCTACAGCTTCGGAACGCTGTTGCTAG
genomic: GAGTTACAGTACAAATTTGGCTTTCACACCTCCTGAATACCTAAGAACAGgtcagttact ... atctcttaagGGAGAGTGATTCCGGAGAGTGTGGTCTACAGCTTCGGAACGCTGTTGCTAG
gacaaagttatgatattgatctgatatatggatgtgcgtttattaatctcttaagGGAGAGTGATTCCGGAGAGTGTGGTCTACAGCTTCGGAACGCTGTTGCTAGATCTTCTCAGCGGCAAACACATACCACCAAGCCAT
tattaat putative branch site (score: 2)
tctctt CT-rich tract
tttattaatctcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttactgatttgagatgcaatggcgtcaagttatgtgtttgctgtttgacaaagttatgatattgatctgatatatggatgtgcgtttattaatctcttaagGGAGAGTGATTCCGGAGAGTGTGGTCTACAGCTTCGGAACGCTGTTGCTAGATCTTCTCAGCGGCAAACACATACCACCAAGCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT