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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGCTGTTAAACTACAAAAAGGACGGAACTCCCTTCTGGAATCTTCTCACAGTCACTCCTATCAAGGACGACCAGGGCAATACCATCAAGTTCATTGGgtacgtcccttaattcctccctgtttttccctaattaatcgactgtccctcgatcaatcattttcacatttccatctgcag

Basic information

species Arabidopsis thaliana
transcript AT5G58140.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58140.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G33560.1 (Glycine max), 5'ss of exon 2
GAAGGCTGTTAAACTACAAAAAGGACGGAACTCCCTTCTGGAATCTTCTCACAGTCACTCCTATCAAGGACGACCAGGGCAATACCATCAAGTTCATTGGgtacgtcccttaattcctccctgtttttccctaattaatcgactgtccctcgatcaatcattttcacat--ttccatctgcag-----------------
| || || ||||||||||| || || |||||||| ||||||||||||||||| ||||| || ||||| || ||||| |||||||| ||||| ||||||||||  ||||     ||| | |||  ||||    | | |||    | |       |   ||||||| || |   | ||  ||                    
GCAGACTTTTAAACTACAAGAAAGATGGAACTCCATTCTGGAATCTTCTCACTGTCACCCCCATCAAAGATGACCATGGCAATACTATCAAATTCATTGGgtcagtcctacctttcttaccttgttttgatcactaaattatgtatattgacttgtgtcatttttacttaagttcacatgataatggaaatccaattggc

upper sequence: AT5G58140.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G19560.1 (Glycine max), 5'ss of exon 2
GAAGGCTGTTAAACTACAAAAAGGACGGAACTCCCTTCTGGAATCTTCTCACAGTCACTCCTATCAAGGACGACCAGGGCAATACCATCAAGTTCATTGGgtacgtccc--------ttaattcctccctgtttttccctaattaatcg-----actg----tccctcgatcaatcattttcacatttccatctgcag--
| || || ||||||||||| || || |||||||| |||||||||||||||||  |||| || ||||| || ||||| |||||||| ||||| ||||||||||  ||||         || ||  ||   |  | |    | | |  ||      ||||    || |  ||| |   |  | ||  |  | | || |||  
GCAGACTTTTAAACTACAAGAAAGATGGAACTCCATTCTGGAATCTTCTCACTATCACCCCCATCAAAGATGACCATGGCAATACTATCAAATTCATTGGgtcagtcctaccttgttttgatcactaaattatgtatattgacttgtcatttttactgaagttcacatgataacggaaatccaattggctaactacagct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125059360|gb|EL128037.1|EL128037
EST:     ACGACCAGGGCAATACCATCAAGTTCATTGG                         GATGCAGGTTGAAGTTAGCAAATACACAGAAGGGGTAAATGATAAAGCATT
genomic: ACGACCAGGGCAATACCATCAAGTTCATTGGgtacgtccct ... ccatctgcagGATGCAGGTTGAAGTTAGCAAATACACAGAAGGGGTAAATGATAAAGCATT