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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatgtttttctgttttgcttgcatcatgtcggtttgcccgtttcattgctcaattgctcttctttttcttccgcagACCTCTACGCACGTCTGTTTGATTACAGACTTCTGCCCAGGTGGAGAGTTGTTTGCACTACTTGACAGACAACCTATGAAAATATTGACAGAAGACTCTG

Basic information

species Arabidopsis thaliana
transcript AT5G58140.3
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58140.4 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA16G19560.1 (Glycine max), 3'ss of exon 16
-----------------------gtagatgtttttctgttttgcttgcatcatgtcggtttgcccgtttcattgctcaattgctc-ttctttttcttccgcagACCTCTACGCACGTCTGTTTGATTACAGACTTCTGCCCAGGTGGAGAGTTGTTTGCACTACTTGACAGACAACCTATGAAAATATTGACAGAAGACTCTG
                           |  ||||  || || |   ||  |     |  ||||| |||     | |   ||| |  ||  |||   ||  |||||  |||| || || ||||||||||| |||||||  || || ||||||||||||||| | |||||||  ||||| ||||| || || | |||||| || |
tgatcctcccacgtggacatgaatcgcaaattttaatgattagg--gctccccactgagttgcctgtta-gcagtttttttgatagtttctttatctcaacagACTCCTACACATGTATGTTTGATTACTGACTTCTTTCCTGGAGGAGAGTTGTTTGCATTGCTTGACAAGCAACCAATGAAGATTTTCAAAGAAGAATCAG

upper sequence: AT5G58140.4 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 14
----------gtagatgtttttctg-ttttgcttgcatcatgt--------cggtttgcccgtttcatt--gctcaattgctcttctttttcttccgcagACCTCTACGCACGTCTGTTTGATTACAGACTTCTGCCCAGGTGGAGAGTTGTTTGCACTACTTGACAGACAACCTATGAAAATATTGACAGAAGACTCTG
           ||  | |||||    |||| |||  || || |           ||  ||   | || |  | |  | || | | | | |   | | |||||  |||| ||||| |||||||| |||||||| | ||| ||||||||||| ||||| || |||||||  ||||| ||||||||||| | ||| || ||||
atatccttttctattttttttttcaatttttcttttataatttacaattagtaattcaccaaatacaatcaggtatactgatgtccctctatcttctcagACTCCTACACACGTTTGTTTGATAACAGACTTTTTCCCTGGTGGAGAGTTATTTGCCCTGCTTGACAAGCAACCCATGAAAATATTTAGAGAGGAATCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcatgtcggtttgcccgtttcattgctcaattgctcttctttttcttccgcagACCTCTACGCACGTCTGTTTGATTACAGACTTCTGCCCAGGTGGAGAGTTGTTTGCACTACTTGACAGACAACCTATGAAAATATTGACAGAAGACTCTG
                        ttgctcaattgctctt  CT-rich tract
                                      ttcttttt  TA-rich tract