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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTATGCAGCAGAGGTTGTTATCGGCTTAGAATATCTTCACTGCTTAGgtaataataatcattgtctctgttgatctaaacattgcttatttatacattgccacatgccttgagtagtctcttcttccaataattttttagctgttgtttcggttaaagatctgtatatattttccataaacag

Basic information

species Arabidopsis thaliana
transcript AT5G58140.3
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58140.3 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 16
GTTCTATGCAGCAGAGGTTGTTATCGGCTTAGAATATCTTCACTGCTTAGgtaataataatcattgtc--tctgttgatctaaacattgcttat-ttatacattgccacatgccttgagtagtctcttcttccaataattttttagctgttgtttcggttaaagatctgtatatattttccataaacag
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GTTCTATGCTGCAGAGGTCGTGATTGGCTTGGAATATCTTCACTGTTTAGgtacttctgacgaccgagaacttgtactgttaatttttgtgagtaccataaagaatgaaagatgttacaaaattcttttttcctaaa---ctatagttgattt------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124819315|gb|EH904181.1|EH904181
EST:     GTTCTATGCAGCAGAGGTTGTTATCGGCTTAGAATATCTTCACTGCTTAG                         GAATTGTATATCGAGA
genomic: GTTCTATGCAGCAGAGGTTGTTATCGGCTTAGAATATCTTCACTGCTTAGgtaataataa ... ccataaacagGAATTGTATATCGAGA