1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagattttgtatgtttgatctttaaactctgtgattgaagatttgaagtagttttacattgtatttgcaaattgttgtagCCTCAGTTGTTGCCTCGAGTAGGAGATATTCATCGGAGTAGTTTTCAGTTCGATTTCGGATTAGAGAGGAAAGTTCTCGCGGAGGCAGAGAAAGATAATC
species | Arabidopsis thaliana |
transcript | AT5G53330.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATAGGAATCAGAGTGAATTTGAAGCCTGAGTATCGGAATTACTCCGCCG CCTCAGTTGTTGCCTCGEST: gi|125257512|gb|EL271597.1|EL271597
genomic: AATAGGAATCAGAGTGAATTTGAAGCCTGAGTATCGGA-TTACTCCGCCGgtaagatttt ... attgttgtagCCTCAGTTGTTGCCTCG
EST: GAATAGGAATCAGAGTGAATTTGAAGCCTGAGTATCGGATTACTCCGCCG CCTCAGTTGTTGCCTCGAGTAGGAGATATTCATCGGAGTAGTTTTCAGEST: gi|124942766|gb|EL019000.1|EL019000
genomic: GAATAGGAATCAGAGTGAATTTGAAGCCTGAGTATCGGATTACTCCGCCGgtaagatttt ... attgttgtagCCTCAGTTGTTGCCTCGAGTAGGAGATATTCATCGGAGTAGTTTTCAG
EST: GAATAGGAATCAGAGTGAATTTGAAGCCTGAGTATCGGATTACTCCGCCG CCTCAGTTGTTGCCTCGAGTAGGAGATATTCATCGGAGTAGTTTTEST: gi|124973315|gb|EL046955.1|EL046955
genomic: GAATAGGAATCAGAGTGAATTTGAAGCCTGAGTATCGGATTACTCCGCCGgtaagatttt ... attgttgtagCCTCAGTTGTTGCCTCGAGTAGGAGATATTCATCGGAGTAGTTTT
EST: TTACTCCGCCG CCTCAGTTGTTGCCTCGAGTAGGAGATATTCATCGGAGTAGTTTTCAGTTCEST: gi|125208112|gb|EL223066.1|EL223066
genomic: TTACTCCGCCGgtaagatttt ... attgttgtagCCTCAGTTGTTGCCTCGAGTAGGAGATATTCATCGGAGTAGTTTTCAGTTC
EST: GAATAGGAATCAGAGTGAATTTGAAGCCTGAGTATCGGATTACTCCGCCG CCTCAGTTGTTGCCTCGAGTAGGAGATATTCAEST: gi|86083697|gb|DR379456.1|DR379456
genomic: GAATAGGAATCAGAGTGAATTTGAAGCCTGAGTATCGGATTACTCCGCCGgtaagatttt ... attgttgtagCCTCAGTTGTTGCCTCGAGTAGGAGATATTCA
EST: GAATAGGAATCAGAGTGAATTTGAAGCCTGAGTATCGGATTACTCCGCCG CCTCAGTTGTTGCCTCGAGTAGGAGATATTCATCGGAGTAGTTTTCAGTTC
genomic: GAATAGGAATCAGAGTGAATTTGAAGCCTGAGTATCGGATTACTCCGCCGgtaagatttt ... attgttgtagCCTCAGTTGTTGCCTCGAGTAGGAGATATTCATCGGAGTAGTTTTCAGTTC
actctgtgattgaagatttgaagtagttttacattgtatttgcaaattgttgtagCCTCAGTTGTTGCCTCGAGTAGGAGATATTCATCGGAGTAGTTTTCAGTTCGATTTCGGATTAGAGAGGAAAGTTCTCGCGGAGGCAGAGAAAGATAATC
ttttacattgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattttgtatgtttgatctttaaactctgtgattgaagatttgaagtagttttacattgtatttgcaaattgttgtagCCTCAGTTGTTGCCTCGAGTAGGAGATATTCATCGGAGTAGTTTTCAGTTCGATTTCGGATTAGAGAGGAAAGTTCTCGCGGAGGCAGAGAAAGATAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA