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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGGTTACCCTAAGATCGGTCAACAAACCGGTCCCGGCCCACAGTTTTTCTCTCCGCCGGAGAGAAACTCTTCGTTTCAACATAACACTTCTCCTTCATgtaagtcttgttctgatctcgaatttggttttacgcgaatttgattagtaattggttttgatcgttgaatttgattttggtag

Basic information

species Arabidopsis thaliana
transcript AT5G53330.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124957495|gb|EL032325.1|EL032325
EST:     CTCTTCGTTTCAACATAACACTTCTCCTTCAT                         CTGGAATAGGAATCAGAGTGAATTTGAAGCCTGAGTATCGGAATTACTCCG
genomic: CTCTTCGTTTCAACATAACACTTCTCCTTCATgtaagtcttg ... attttggtagCTGGAATAGGAATCAGAGTGAATTTGAAGCCTGAGTATCGGA-TTACTCCG
EST: gi|125208112|gb|EL223066.1|EL223066
EST:     ACTTCTCCTTCAT                         CTGGAATAGGAATCAGAGTGAATTTGAAGCCTGAGTATCGGATTACTCCGC
genomic: ACTTCTCCTTCATgtaagtcttg ... attttggtagCTGGAATAGGAATCAGAGTGAATTTGAAGCCTGAGTATCGGATTACTCCGC
EST: gi|86083697|gb|DR379456.1|DR379456
EST:     TCAACATAACAC-TCTCCTTCAT                         CTGGAATAGGAATCAGAGTGAATTTGAAGCCTGAGTATCGGATTACTCCGC
genomic: TCAACATAACACTTCTCCTTCATgtaagtcttg ... attttggtagCTGGAATAGGAATCAGAGTGAATTTGAAGCCTGAGTATCGGATTACTCCGC