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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaatcgtagctttgagtgttttggggattgtttcttttcttttggtgttttctgtgttcttacaagtgtgtttattcatgcagCTTGAATACTTGGAGGAGAGGAGACTCAAAGACTTGGTGAAGAAGCACTCTGAGTTCATCAGTTACCCTATCTACCTTTGGACCGAGAAAACCACCGAGA

Basic information

species Arabidopsis thaliana
transcript AT5G52640.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116451904|gb|EG494496.1|EG494496
EST:     AACCACTTGGTAGAGGAACTAAGATCACCCTCTTCCTTAAGGACGATCAG                         CTTGAATACTTGGAGGAGAGGAGACTCAAAGACTTGGTGAAGAAGCACTCT
genomic: AACCACTTGGTAGAGGAACTAAGATCACCCTCTTCCTTAAGGACGATCAGgtaaggaatc ... attcatgcagCTTGAATACTTGGAGGAGAGGAGACTCAAAGACTTGGTGAAGAAGCACTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttcttttcttttggtgttttctgtgttcttacaagtgtgtttattcatgcagCTTGAATACTTGGAGGAGAGGAGACTCAAAGACTTGGTGAAGAAGCACTCTGAGTTCATCAGTTACCCTATCTACCTTTGGACCGAGAAAACCACCGAGA
                            ttcttac  putative branch site (score: 2)
                                          tttattc  putative PPT
      ttttctttt  TA-rich tract