1 5' 3' | 2 5' 3' | 3 5' 3' |
...acatatatagaacggttcttgcttcgatgtagtctttgatttaccctagaggattgaggaaagcttctgattatctttgtttatatgaatggttttgtagGCTCTTGACAAGATCCGATTTGAGAGCTTAACGGATAAGAGCAAGCTCGATGGACAGCCTGAACTCTTCATTAGATTGGTTCCTGACAAGTCTAATAAGA
species | Arabidopsis thaliana |
transcript | AT5G52640.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAGCAACAAAGAAATCTTCCTCCGTGAGCTCATCAGTAACTCTTCTGAT GCTCTTGACAAGATTCGATTTGAGAGCTTAACGGANAAGAGCAAGCTCGATEST: gi|116451904|gb|EG494496.1|EG494496
genomic: ACAGCAACAAAGAAATCTTCCTCCGTGAGCTCATCAGTAACTCTTCTGATgtaagtttcc ... ggttttgtagGCTCTTGACAAGATCCGATTTGAGAGCTTAACGGATAAGAGCAAGCTCGAT
EST: ACAGCAACAAAGAAATCTTCCTCCGTGAGCTCATCAGTAACTCTTCTGAT GCTCTTGACAAGATCCGATTTGAGAGCTTAACGGATAAGAGCAAGCTCGAT
genomic: ACAGCAACAAAGAAATCTTCCTCCGTGAGCTCATCAGTAACTCTTCTGATgtaagtttcc ... ggttttgtagGCTCTTGACAAGATCCGATTTGAGAGCTTAACGGATAAGAGCAAGCTCGAT
ctagaggattgaggaaagcttctgattatctttgtttatatgaatggttttgtagGCTCTTGACAAGATCCGATTTGAGAGCTTAACGGATAAGAGCAAGCTCGATGGACAGCCTGAACTCTTCATTAGATTGGTTCCTGACAAGTCTAATAAGA
ttctgat putative branch site (score: 3)
attatctttgtttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatatatagaacggttcttgcttcgatgtagtctttgatttaccctagaggattgaggaaagcttctgattatctttgtttatatgaatggttttgtagGCTCTTGACAAGATCCGATTTGAGAGCTTAACGGATAAGAGCAAGCTCGATGGACAGCCTGAACTCTTCATTAGATTGGTTCCTGACAAGTCTAATAAGA
acatata
- - - - - - - - - ttgcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggaaa