1 5' 3' | 2 5' 3' | 3 5' 3' |
TTTCCAAGCTGAGATTAACCAGCTTCTTAGCTTGATCATCAACACGTTCTACAGCAACAAAGAAATCTTCCTCCGTGAGCTCATCAGTAACTCTTCTGATgtaagtttcccttcaaatctctctctgctcggtgtgactcgtccgcttcctattttcttgcatgttgtttgttctttaattcctggattcgttgatagcg...
species | Arabidopsis thaliana |
transcript | AT5G52640.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACAGCAACAAAGAAATCTTCCTCCGTGAGCTCATCAGTAACTCTTCTGAT GCTCTTGACAAGATTCGATTTGAGAGCTTAACGGANAAGAGCAAGCTCGATEST: gi|116451904|gb|EG494496.1|EG494496
genomic: ACAGCAACAAAGAAATCTTCCTCCGTGAGCTCATCAGTAACTCTTCTGATgtaagtttcc ... ggttttgtagGCTCTTGACAAGATCCGATTTGAGAGCTTAACGGATAAGAGCAAGCTCGAT
EST: ACAGCAACAAAGAAATCTTCCTCCGTGAGCTCATCAGTAACTCTTCTGAT GCTCTTGACAAGATCCGATTTGAGAGCTTAACGGATAAGAGCAAGCTCGAT
genomic: ACAGCAACAAAGAAATCTTCCTCCGTGAGCTCATCAGTAACTCTTCTGATgtaagtttcc ... ggttttgtagGCTCTTGACAAGATCCGATTTGAGAGCTTAACGGATAAGAGCAAGCTCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCCAAGCTGAGATTAACCAGCTTCTTAGCTTGATCATCAACACGTTCTACAGCAACAAAGAAATCTTCCTCCGTGAGCTCATCAGTAACTCTTCTGATgtaagtttcccttcaaatctctctctgctcggtgtgactcgtccgcttcctattttcttgcatgttgtttgttctttaattcctggattcgttgatagcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcttcct