Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCGTTTTGATTCGGTTTACAACATTCTATTCAAATGCACCAAGAAGAAGCTTGTTGAATACCCAAATCTCTATGGCTATTTGCGCGAGATTTACCAGgttcctcttcttactggcttctctctgagacataaattctgcatctgggagtgtgtttcaaattatgtgtttgttgttgttgttgaaacag

Basic information

species Arabidopsis thaliana
transcript AT5G44000.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G44000.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv07s0005g04180.t01 (Vitis vinifera), 5'ss of exon 2
GATTCGTTTTGATTCGGTTTACAACATTCTATTCAAATGCACCAAGAAGAAGCTTGTTGAATACCCAAATCTCTATGGCTATTTGCGCGAGATTTACCAGgttcctcttcttactggcttc-tctctgagacataaattctgcatctgggagtgtgtttcaaattatgtgtttgttgttgttgttgaaacag
| ||||||| |||   || |||||| |||| ||||||||||| |||||||||||| |||| || || |||||  |||| ||  |||| || ||||||||||| |   ||  | |||    | | | | | |  ||   |  |  |    | | ||||  | ||  |   || |||   | ||     |||||
GGTTCGTTTCGATCTTGTGTACAACGTTCTTTTCAAATGCACGAAGAAGAAGCTTCTTGAGTATCCCAATCTTCATGGATACATGCGAGACATTTACCAGgtactagtttgttctgaaaacatttattatatttatggtacgatttcatgtgggtgtgcctaaaaa---gtgtgtatctattccctgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125016420|gb|EL088689.1|EL088689
EST:     TGGCTATTTGCGCGAGATTTACCAG                         ATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGCTAC
genomic: TGGCTATTTGCGCGAGATTTACCAGgttcctcttc ... gttgaaacagATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGCTAC
EST: gi|86083607|gb|DR379366.1|DR379366
EST:     AGCTTGTTGAATACCCGAATCTCTATGGCTATTTGCGCGAGATTTACCAG                         ATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGCTAC
genomic: AGCTTGTTGAATACCCAAATCTCTATGGCTATTTGCGCGAGATTTACCAGgttcctcttc ... gttgaaacagATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGCTAC