1 5' 3' | 2 5' 3' |
CCCGAAATGATAACTTGGATCTCTCGCCACCAGAGTTGAAAGAGATGATACAAGGTTGGAATCAGATTGTGTATCCTAAAGTTAACAATGGCGTTTACAGgtaaattggaaaacatcattacaatgtttatagaatgttacaatggcgtttacaagtaagcgggatatcaaaaaagctataggaatggagtgaattgttc...
species | Arabidopsis thaliana |
transcript | AT5G44000.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAAGGTTGGAATCAGATTGTGTATCCTAAAGTTAACAATGGCGTTTACAG GTGCGGGTTTGCGEST: gi|125295636|gb|EL309721.1|EL309721
genomic: CAAGGTTGGAATCAGATTGTGTATCCTAAAGTTAACAATGGCGTTTACAGgtaaattgga ... tttttgaaagGTGCGGGTTTGCG
EST: CAAGGTTGGAATCAGATTGTGTATCCTAAAGTTAACAATGGCGTTTACAG GTGCGGGTTTGCG
genomic: CAAGGTTGGAATCAGATTGTGTATCCTAAAGTTAACAATGGCGTTTACAGgtaaattgga ... tttttgaaagGTGCGGGTTTGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCGAAATGATAACTTGGATCTCTCGCCACCAGAGTTGAAAGAGATGATACAAGGTTGGAATCAGATTGTGTATCCTAAAGTTAACAATGGCGTTTACAGgtaaattggaaaacatcattacaatgtttatagaatgttacaatggcgtttacaagtaagcgggatatcaaaaaagctataggaatggagtgaattgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaaa