Sequence
atgc intronic sequence ATGC exonic sequencegttcctcttcttactggcttctctctgagacataaattctgcatctgggagtgtgtttcaaattatgtgtttgttgttgttgttgaaacagATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGCTACTACAAGACGCTGTTTCCGCTAAACGCTAGTGGAATTCAACCGGCCATTT
Basic information
species | Arabidopsis thaliana |
transcript | AT5G44000.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125016420|gb|EL088689.1|EL088689EST: TGGCTATTTGCGCGAGATTTACCAG ATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGCTAC
genomic: TGGCTATTTGCGCGAGATTTACCAGgttcctcttc ... gttgaaacagATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGCTAC
EST:
gi|86083607|gb|DR379366.1|DR379366EST: AGCTTGTTGAATACCCGAATCTCTATGGCTATTTGCGCGAGATTTACCAG ATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGCTAC
genomic: AGCTTGTTGAATACCCAAATCTCTATGGCTATTTGCGCGAGATTTACCAGgttcctcttc ... gttgaaacagATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGCTAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctgcatctgggagtgtgtttcaaattatgtgtttgttgttgttgttgaaacagATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGCTACTACAAGACGCTGTTTCCGCTAAACGCTAGTGGAATTCAACCGGCCATTT
tttcaaattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcctcttcttactggcttctctctgagacataaattctgcatctgggagtgtgtttcaaattatgtgtttgttgttgttgttgaaacagATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGCTACTACAAGACGCTGTTTCCGCTAAACGCTAGTGGAATTCAACCGGCCATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA