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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaacaaaatctgcttagttatgtagttataatcatcactttttaacttttgtttgtgctctaaaaatctcgcagATACCATCTTAAATCTTCAATTCTTTCCGTACTTTCATGTCTTATCCTGAAACCAAG

Basic information

species Arabidopsis thaliana
transcript AT5G43822.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083779|gb|DR379538.1|DR379538
EST:     ACTGATTGCTTGGAGGGACTTTCTATTCTTTATGACATGCATCAATCAGA                         ATACCATCTTAAATCTTCAATTCTTTCCGTACTTTCATGTCTTATCCTGAA
genomic: ACTGATTGCTTGGAGGGACTTTCTATTCTTTATGACATGCATCAATCAGAgtaagcaaac ... aatctcgcagATACCATCTTAAATCTTCAATTCTTTCCGTACTTTCATGTCTTATCCTGAA
EST: gi|86056916|gb|DR352673.1|DR352673
EST:     ACTGATTGCTTGGAGGGACTTTCTATTCTTTATGACATGCATCAATCAGA                         ATACCATCTTAAATCTTCAATTCTTTCCGTACT
genomic: ACTGATTGCTTGGAGGGACTTTCTATTCTTTATGACATGCATCAATCAGAgtaagcaaac ... aatctcgcagATACCATCTTAAATCTTCAATTCTTTCCGTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtagttataatcatcactttttaacttttgtttgtgctctaaaaatctcgcagATACCATCTTAAATCTTCAATTCTTTCCGTACTTTCATGTCTTATCCTGAAACCAAG
                   tttttaacttttgttt  TA-rich tract