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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAGAAAAGGGAAGGAGGAGATGGAAAAGTGGGAGGCACTTCAAGTTCGATGGGTGTCCCTCTTCAGGAACGCTTCTTCTATCATCCAGAGATTACAGgtagcttgaatctttgtggtttgttgtcagaaattttgaaactgtatgtgtgattttttgggtttgggaatag

Basic information

species Arabidopsis thaliana
transcript AT5G43822.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86056915|gb|DR352672.1|DR352672
EST:     GATGGGTGTCCCTCTTCAGGAACGCTTCTTCTATCATCCAGAGATTACAG                         GAAATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAAGG-ATT
genomic: GATGGGTGTCCCTCTTCAGGAACGCTTCTTCTATCATCCAGAGATTACAGgtagcttgaa ... ttgggaatagGAAATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAAGGGATT
EST: gi|86056916|gb|DR352673.1|DR352673
EST:     GATGGGTGTCCCTCTTCAGGAACGCTTCTTCTATCATCCAGAGATTACAG                         GAAATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAA-GGATT
genomic: GATGGGTGTCCCTCTTCAGGAACGCTTCTTCTATCATCCAGAGATTACAGgtagcttgaa ... ttgggaatagGAAATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAAGGGATT
EST: gi|86056917|gb|DR352674.1|DR352674
EST:     GATGGGTGTCCCTCTTCAGGAACGCTTCTTCTATCATCCAGAGATTACAG                         GAAATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAAGG-ATT
genomic: GATGGGTGTCCCTCTTCAGGAACGCTTCTTCTATCATCCAGAGATTACAGgtagcttgaa ... ttgggaatagGAAATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAAGGGATT