1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagcttgaatctttgtggtttgttgtcagaaattttgaaactgtatgtgtgattttttgggtttgggaatagGAAATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAAGGGATTGAAGACGCAGTTGTGCAGCAACAGATGGGTCAACTGGAGTCTCTATTGC
species | Arabidopsis thaliana |
transcript | AT5G43822.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATGGGTGTCCCTCTTCAGGAACGCTTCTTCTATCATCCAGAGATTACAG GAAATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAAGG-ATTEST: gi|86056916|gb|DR352673.1|DR352673
genomic: GATGGGTGTCCCTCTTCAGGAACGCTTCTTCTATCATCCAGAGATTACAGgtagcttgaa ... ttgggaatagGAAATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAAGGGATT
EST: GATGGGTGTCCCTCTTCAGGAACGCTTCTTCTATCATCCAGAGATTACAG GAAATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAA-GGATTEST: gi|86056917|gb|DR352674.1|DR352674
genomic: GATGGGTGTCCCTCTTCAGGAACGCTTCTTCTATCATCCAGAGATTACAGgtagcttgaa ... ttgggaatagGAAATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAAGGGATT
EST: GATGGGTGTCCCTCTTCAGGAACGCTTCTTCTATCATCCAGAGATTACAG GAAATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAAGG-ATT
genomic: GATGGGTGTCCCTCTTCAGGAACGCTTCTTCTATCATCCAGAGATTACAGgtagcttgaa ... ttgggaatagGAAATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAAGGGATT
gtttgttgtcagaaattttgaaactgtatgtgtgattttttgggtttgggaatagGAAATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAAGGGATTGAAGACGCAGTTGTGCAGCAACAGATGGGTCAACTGGAGTCTCTATTGC
aaattttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcttgaatctttgtggtttgttgtcagaaattttgaaactgtatgtgtgattttttgggtttgggaatagGAAATGCAAAATCATGGGAGCTATGGAGCTTTGAGATGCCTGAAAGGGATTGAAGACGCAGTTGTGCAGCAACAGATGGGTCAACTGGAGTCTCTATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG