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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatacatctattaaagatccattttatctccttctgttcatgtcttaattgcattgtcgatattgtagTGGAGATCAAGATTCTGTAGTTCCATTCGGGGGTTCAAGAACTCTCGTAAGAGAACTTGCTCAAGATCTCAACTTCAAGACAACAGTTCCCTATGGAGCC

Basic information

species Arabidopsis thaliana
transcript AT5G42240.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164196765|gb|ES135031.1|ES135031
EST:     CCGATTCTGAAGAGAATTATACTGAACAAAACTCCTATTTGGATCTTCAG                         TGGAGATCAAGATTCTGTA
genomic: CCGATTCTGAAGAGAATTATACTGAACAAAACTCCTATTTGGATCTTCAGgttatacatc ... gatattgtagTGGAGATCAAGATTCTGTA
EST: gi|86080062|gb|DR375819.1|DR375819
EST:     CCGATTCTGAAGAGAATTATACAGAACAAAACTCCTGTTTGGATCTTCAG                         TGGAGATCAAGATTCTGTAGTTCCATTCGGAGGTTCAAGAACTCTCGTAAG
genomic: CCGATTCTGAAGAGAATTATACTGAACAAAACTCCTATTTGGATCTTCAGgttatacatc ... gatattgtagTGGAGATCAAGATTCTGTAGTTCCATTCGGGGGTTCAAGAACTCTCGTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagatccattttatctccttctgttcatgtcttaattgcattgtcgatattgtagTGGAGATCAAGATTCTGTAGTTCCATTCGGGGGTTCAAGAACTCTCGTAAGAGAACTTGCTCAAGATCTCAACTTCAAGACAACAGTTCCCTATGGAGCC
                             tcttaat  putative branch site (score: 3)
       attttatct  TA-rich tract