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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCCATTCGGGGGTTCAAGAACTCTCGTAAGAGAACTTGCTCAAGATCTCAACTTCAAGACAACAGTTCCCTATGGAGCCTGGTTCCACAAAAGCCAGgtagtttgcctacaccattaaacaatacaatcagcagaagccaagtttactttttacccctgcaaaagtttctcaaactgattacaaacttgtggatgtgactag

Basic information

species Arabidopsis thaliana
transcript AT5G42240.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G42240.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA04G41970.1 (Glycine max), 5'ss of exon 9
AGTTCCATTCGGGGGTTCAAGAACTCTCGTAAGAGAACTTGCTCAAGATCTCAACTTCAAGACAACAGTTCCCTATGGAGCCTGGTTCCACAAAAGCCAGgtagtttgcc-tacaccattaaacaatacaatcagcagaagccaagtttacttttta--cccctgcaaaa--gtttctcaaactgattacaaacttgtggatg---tgactag---------------------------
 || |||||    |||||  |||| ||  |  | ||||| ||||| ||||| || ||||||| |||||| || |||||||| |||||||||||| |||||||| ||||    |    ||||  ||     |  |     |   || ||| || | ||      |||||     ||    | ||| |||   ||  | ||| ||   | | | |                           
TGTGCCATTACTAGGTTCTCGAACACTAATTCGTGAACTAGCTCATGATCTAAAGTTCAAGATAACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGgtactttgtaacaattaattatgcacattgaaaaatttcatataatttttctatgtaaggttttgcaattttattctctacactaatttataaagtatgggtggtttaatttgatggcatttatatatacgcatatatag

upper sequence: AT5G42240.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA06G12800.1 (Glycine max), 5'ss of exon 9
AGTTCCATTCGGGGGTTCAAGAACTCTCGTAAGAGAACTTGCTCAAGATCTCAACTTCAAGACAACAGTTCCCTATGGAGCCTGGTTCCACAAAAGCCAGgtagtt--------tgcctacac-cattaaacaatac------aatcagcagaagccaag-tttact-ttttac-ccctgcaaaagtttctcaa--actgattacaaacttg--tggatgtgactag-----------------
 || |||||    |||||  |||| ||  |  | ||||| ||||| ||||| || |||||||  ||||| || |||||||| |||||||||||| |||||||| ||        |   ||  | |||| || |||        |||      | |  ||| ||| || |||||  |||| |   | ||| | ||  |  |      |||||   | ||||  | |                   
TGTGCCATTACTAGGTTCTCGAACACTAATTCGTGAACTAGCTCATGATCTTAAGTTCAAGATTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGgtatttgtaacaattaattatgcacattgaaaaattttcatttaatttttctatgttaaggtttgctattttattccctaccttaatttataaagtatgggcggttaacttaatttgatggcatttatatatatgcatatatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074310|gb|DR370067.1|DR370067
EST:     TCAACTTCAAGACAACAGTTCCCTATGGAGCCTGGTTCCACAAAAGCCAG                         GTTGGAGGCTGGGCCATAGAGTATGGAAAACTACTGACGTTTGCAACAGTG
genomic: TCAACTTCAAGACAACAGTTCCCTATGGAGCCTGGTTCCACAAAAGCCAGgtagtttgcc ... atgtgactagGTTGGAGGCTGGGCCATAGAGTATGGAAAACTACTGACGTTTGCAACGGTG
EST: gi|86080062|gb|DR375819.1|DR375819
EST:     TCAACTTCAAGACAACAGTTCCCTATGGAGCCTGGTTCCACAAAAGCCAG                         GTTGGAGGCTGGGCCATAGAGTATGGAAAACTACTGACGTTTGCAACAGTG
genomic: TCAACTTCAAGACAACAGTTCCCTATGGAGCCTGGTTCCACAAAAGCCAGgtagtttgcc ... atgtgactagGTTGGAGGCTGGGCCATAGAGTATGGAAAACTACTGACGTTTGCAACGGTG