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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCTTCAATTGGTGGAGGAGCTTTCACTGAGTTGGGTCCATTTTACCCCACTGGCGATGGCCGTGGCCTTCGTGTTAACTCCATGTCTTGGAACAAAGgtttgtttttgacaattttaagcaaagagaacagaactctgtgattttatatatgatgctattctctcttggtgtaatatgtgtag

Basic information

species Arabidopsis thaliana
transcript AT5G42240.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G42240.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA04G41970.1 (Glycine max), 5'ss of exon 2
TGTTCTTCAATTGGTGGAGGAGCTTTCACTGAGTTGGGTCCATTTTACCCCACTGGCGATGGCCGTGGCCTTCGTGTTAACTCCATGTCTTGGAACAAAGgtttgtttt---tgaca--at-tttaagca--------------aagagaacagaactctgtgattttatatatgatgct-attctctcttggtgtaatatgtgtag
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TGTTCCTCCATTGGAGGAGGTGCTTTCACTGAGTTGGGTCCCTTTTATCCCAAAGGTGATGGACGTGGTCTCCGAAGAAATTCAATGTCTTGGAATAGAGgtataatatatgtgacacaatatttatgcatgaattttccttgtgatattggagaataatgtgggtttacattgattcctgattatgatattatgtctttttcatag