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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTAGGGTTTCGCGTTAGGAGAAGAAGTTAAAGCAAAACACATACAAACGCAGTCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATGgtaacatctctaaaccctaaatcactccttacgtgaatcaaatactgatttcaaaatgctgagtatactcaaactgtatataaaaaagctaatcttgtttctcgtatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G41520.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831362|gb|CK121046.1|CK121046
EST:     ACGCAGTCACCTTCTCTGTCGCCTCCTTCTTCAATCTCATCGCAATCATG                         ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGAG
genomic: ACGCAGTCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATGgtaacatctc ... gtatttgcagATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTC-AA-AG
EST: gi|116471696|gb|EG514288.1|EG514288
EST:     ACGCAGTCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATG                         ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGAG
genomic: ACGCAGTCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATGgtaacatctc ... gtatttgcagATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTC-AA-AG
EST: gi|116406681|gb|EG449273.1|EG449273
EST:     ACGCAGTCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATG                         ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGAG
genomic: ACGCAGTCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATGgtaacatctc ... gtatttgcagATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTC-AA-AG
EST: gi|163976375|gb|EL979175.1|EL979175
EST:     TCGCAATCATG                         ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG
genomic: TCGCAATCATGgtaacatctc ... gtatttgcagATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAG
EST: gi|124800384|gb|EH890049.1|EH890049
EST:     TCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATG                         ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCA
genomic: TCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATGgtaacatctc ... gtatttgcagATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCA
EST: gi|116471706|gb|EG514298.1|EG514298
EST:     ACGCAGTCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATG                         ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGAG
genomic: ACGCAGTCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATGgtaacatctc ... gtatttgcagATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTC-AA-AG
EST: gi|124804253|gb|EH892168.1|EH892168
EST:     CTTCAATCTCATCGCAATCATG                         ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAGGAG
genomic: CTTCAATCTCATCGCAATCATGgtaacatctc ... gtatttgcagATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAA--AG
EST: gi|116476370|gb|EG518962.1|EG518962
EST:     ACGCAGTCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATG                         ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGAG
genomic: ACGCAGTCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATGgtaacatctc ... gtatttgcagATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTC-AA-AG
EST: gi|124738327|gb|EH829671.1|EH829671
EST:     ACGCAGTCACCTTCTCTATCGCCTCC-TCTTCAATCTCATCGCAATCATG                         ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACC
genomic: ACGCAGTCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATGgtaacatctc ... gtatttgcagATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACC
EST: gi|116406665|gb|EG449257.1|EG449257
EST:     ACGCAGTCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATG                         ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGAG
genomic: ACGCAGTCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATGgtaacatctc ... gtatttgcagATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTC-AA-AG
EST: gi|116471734|gb|EG514326.1|EG514326
EST:     CTATCGCCTCCTTCTTCAATCTCATCGCAATCATG                         ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGAG
genomic: CTATCGCCTCCTTCTTCAATCTCATCGCAATCATGgtaacatctc ... gtatttgcagATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTC-AA-AG
EST: gi|124793263|gb|EH882942.1|EH882942
EST:     ATCGCCTCCTTTCTTCAATCTCATCGCAATCATG                         ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAG
genomic: ATCGCCTCC-TTCTTCAATCTCATCGCAATCATGgtaacatctc ... gtatttgcagATCATATCAGAGACTAACCGCCGTGAGATCTCCAAG
EST: gi|116471744|gb|EG514336.1|EG514336
EST:     ACGCAGTCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATG                         ATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGAG
genomic: ACGCAGTCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATGgtaacatctc ... gtatttgcagATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTC-AA-AG