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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCCGAATGATCTTTCCAAAAGAGCCAAGATTCACTCCGTTTTGGATTGGCATCACACCAATTTACGCCCTGGTGCATgtattatattcataacagtatcgatgttaattagttgtatattcaaataaggcttcatgtttctgattacggttatttaacaatctctcag

Basic information

species Arabidopsis thaliana
transcript AT5G41240.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G41240.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv02s0025g03620.t01 (Vitis vinifera), 5'ss of exon 5
GTACCCGAATGATCTTTCCAAAAGAGCCAAGATTCACTCCGTTTTGGATTGGCATCACACCAATTTACGCCCTGGTGCATgtattatattcataacagt-atcgatg------ttaattagttgtatattcaaataaggcttcatgtttctgatt----acggttatttaacaatctctcag
|||||| |||||||||| ||| ||||| ||||| ||||| || ||||||||||||||  |||| ||||| | ||||||| ||  |   ||      | | || ||||      ||   ||  ||  |||   |||     |  || ||||   ||    | |  || | |||  |||||   
GTACCCAAATGATCTTTTCAAGAGAGCTAAGATCCACTCAGTGTTGGATTGGCATCATTCCAACTTACGTCGTGGTGCAGgtgcttccttttggctactgatagatgctctcattttctaactgattatgacaatcttaatatatctttcgactttgcaaggaataatcaaccgtctctt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86068181|gb|DR363938.1|DR363938
EST:     GATTCACTCCGTTTTGGATTGGCATCACACCAATTTACGCCCTGGTGCAT                         CTGGATATGTTCTGAATAGCGTTCTAGCTCCAGCTCTTGGTCTTCCACTGA
genomic: GATTCACTCCGTTTTGGATTGGCATCACACCAATTTACGCCCTGGTGCATgtattatatt ... aatctctcagCTGGATATGTTCTGAATAGCGTTCTAGCTCCAGCTCTTGGTCTTCCACTGA