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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctctacttcgtttgacacatgcatgtacttgattgcaaagtgtaatcattttacttttagGTACCCGAATGATCTTTCCAAAAGAGCCAAGATTCACTCCGTTTTGGATTGGCATCACACCAATTTACGCCCTGGTGCAT

Basic information

species Arabidopsis thaliana
transcript AT5G41240.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G41240.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv02s0025g03620.t01 (Vitis vinifera), 3'ss of exon 4
------------------gtaagtttctctacttcgt-ttgacac---atgcatgtacttgattgcaaagtgt-aatcatttt---------acttttagGTACCCGAATGATCTTTCCAAAAGAGCCAAGATTCACTCCGTTTTGGATTGGCATCACACCAATTTACGCCCTGGTGCAT
                   ||  ||  |  |  |  | || ||     ||     || ||    ||||| | | |||| ||||         | ||  |||||||| |||||||||| ||| ||||| ||||| ||||| || ||||||||||||||  |||| ||||| | ||||||| 
aatatgttatacgttacaatattttgtttcatcttatattcacttccaatatccatattttgcagcaaaattttaatcctttttccccctatatttcaagGTACCCAAATGATCTTTTCAAGAGAGCTAAGATCCACTCAGTGTTGGATTGGCATCATTCCAACTTACGTCGTGGTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86068181|gb|DR363938.1|DR363938
EST:     GCTATATTGATATATCTTTCCTCAGCATACGCAAGTGTAGTTGATCATTG                         GTACCCGAATGATCTTTCCAAAAGAGCCAAGATTCACTCCGTTTTGGATTG
genomic: GCTATATTGATATATCTTTCCTCAGCATACGCAAGTGTAGTTGATCATTGgtaagtttct ... ttacttttagGTACCCGAATGATCTTTCCAAAAGAGCCAAGATTCACTCCGTTTTGGATTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcgtttgacacatgcatgtacttgattgcaaagtgtaatcattttacttttagGTACCCGAATGATCTTTCCAAAAGAGCCAAGATTCACTCCGTTTTGGATTGGCATCACACCAATTTACGCCCTGGTGCAT
                                           ttttactttt  CT-rich tract
                                     taatcattttactttt  TA-rich tract