Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccctttaacacaaagttgcttcctttgtatcgaaacaccattgtttatgaataatcttaaccgtttgtctgtttcttcttctcgcagTCACGCTATATTGATATATCTTTCCTCAGCATACGCAAGTGTAGTTGATCATTG

Basic information

species Arabidopsis thaliana
transcript AT5G41240.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86068181|gb|DR363938.1|DR363938
EST:     ATGGGGAAAGTTCCAGCTATTGTTGATGGCAGACTTAAGCTATTTGAGAG                         TCACGCTATATTGATATATCTTTCCTCAGCATACGCAAGTGTAGTTGATCA
genomic: ATGGGGAAAGTTCCAGCTATTGTTGATGGCAGACTTAAGCTATTTGAGAGgttcccttta ... cttctcgcagTCACGCTATATTGATATATCTTTCCTCAGCATACGCAAGTGTAGTTGATCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacaccattgtttatgaataatcttaaccgtttgtctgtttcttcttctcgcagTCACGCTATATTGATATATCTTTCCTCAGCATACGCAAGTGTAGTTGATCATTG
                      tcttaac  putative branch site (score: 2)
                            ccgtttgtctgtttct  CT-rich tract
       attgtttatgaataat  TA-rich tract