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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCAAGAAGAATCTACAAGTCTTGAATCTTGAGAAGTCAGAAGGAGTCTTCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttttcgatttgacgatttcaataattaggtttatttatatgcttttgactaaagcagaagtctttaaatttctgcacag

Basic information

species Arabidopsis thaliana
transcript AT5G39930.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116463908|gb|EG506500.1|EG506500
EST:     TCTCTAGGAGCTCTGACTCTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463899|gb|EG506491.1|EG506491
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463918|gb|EG506510.1|EG506510
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463874|gb|EG506466.1|EG506466
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463877|gb|EG506469.1|EG506469
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463913|gb|EG506505.1|EG506505
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463891|gb|EG506483.1|EG506483
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463879|gb|EG506471.1|EG506471
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463884|gb|EG506476.1|EG506476
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACGGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463901|gb|EG506493.1|EG506493
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCAAGAAGAATCTACAAGTCTTGAATCTTGAGAAGTCAGAAGGAGTCTTCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttttcgatttgacgatttcaataattaggtttatttatatgcttttgactaaagcagaagtctttaaatttctgcacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT