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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTTCTCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAAgtaatgtatcgaatatatttttttctcgcttaaccctaaatcaagaaacctacaatgaccttcattgatctctgtcatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G39930.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116463908|gb|EG506500.1|EG506500
EST:     TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAA                         GAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
genomic: TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAAgtaatgtatc ... tcatttgcagGAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
EST: gi|116463910|gb|EG506502.1|EG506502
EST:     TCCATGCAATAGGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAA                         GAGGAAAAACTCGTCTA
genomic: TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAAgtaatgtatc ... tcatttgcagGAGGAAAAACTCGTCTA
EST: gi|116463899|gb|EG506491.1|EG506491
EST:     TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAA                         GAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
genomic: TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAAgtaatgtatc ... tcatttgcagGAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
EST: gi|116463918|gb|EG506510.1|EG506510
EST:     TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAA                         GAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
genomic: TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAAgtaatgtatc ... tcatttgcagGAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
EST: gi|116463874|gb|EG506466.1|EG506466
EST:     TCCATGCAATAAGGACGTTTTATGCGTCTTTAGTTATTGTCGTTGGTCAA                         GAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
genomic: TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAAgtaatgtatc ... tcatttgcagGAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
EST: gi|116463877|gb|EG506469.1|EG506469
EST:     TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAA                         GAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
genomic: TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAAgtaatgtatc ... tcatttgcagGAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
EST: gi|116463913|gb|EG506505.1|EG506505
EST:     TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAA                         GAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
genomic: TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAAgtaatgtatc ... tcatttgcagGAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
EST: gi|116463891|gb|EG506483.1|EG506483
EST:     TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAA                         GAGGAAAAACGCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
genomic: TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAAgtaatgtatc ... tcatttgcagGAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
EST: gi|116463879|gb|EG506471.1|EG506471
EST:     TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAA                         GAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
genomic: TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAAgtaatgtatc ... tcatttgcagGAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
EST: gi|116463884|gb|EG506476.1|EG506476
EST:     TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAA                         GAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
genomic: TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAAgtaatgtatc ... tcatttgcagGAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
EST: gi|116463901|gb|EG506493.1|EG506493
EST:     TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAA                         GAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT
genomic: TCCATGCAATAAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAAgtaatgtatc ... tcatttgcagGAGGAAAAACTCGTCTATGATCTGAAGAAAAATCTAAAATTCAAGAAGAAT