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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGCCTAATTTGCGAGGAGTGGTTTTGCACAGCCCTATTCTCTCTGGGATGAGAGTTTTGTATCCGGTTAAACGTACCTATTGGTTTGACATTTACAAGgtaatttagcaaacattcagctatgtttgttctggttttcatgtgttcatgcttacacgcacaattctttgtttcag

Basic information

species Arabidopsis thaliana
transcript AT5G38220.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G38220.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g49510.1 (Oryza sativa), 5'ss of exon 3
CACGCCTAATTTGCGAGGAGTGGTTTTGCACAGCCCTATTCTCTCTGGGATGAGAGTTTTGTATCCGGTTAAACGTACCTATTGGTTTGACATTTACAAGgtaa-tttagcaaacattcagctatgtttgttctggttttcatgtgttcatgcttacacgcacaat-tctttgtttcag
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TTTGCCAAATTTGCGAGGTGTGGTTTTGCACAGTCCCATTTTATCTGGACTAAGAGTACTATATCCTGTCAAAAGGACGTATTGGTTTGACATTTATAAGgtaaacttgatttcttttcacctctccctgg---aattcttgtttctgaatgctgatatactttccctccatgttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124987450|gb|EL059906.1|EL059906
EST:     TGAGAGTTTTGTATCCGGTTAAACGTACCTATTGGTTTGACATTTACAAG                         AATATTGACAAGATCGGTGCAGTTACCTGTCCTGTCTTAGTAAT
genomic: TGAGAGTTTTGTATCCGGTTAAACGTACCTATTGGTTTGACATTTACAAGgtaatttagc ... tttgtttcagAATATTGACAAGATCGGTGCAGTTACCTGTCCTGTCTTAGTAAT