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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttagcaaacattcagctatgtttgttctggttttcatgtgttcatgcttacacgcacaattctttgtttcagAATATTGACAAGATCGGTGCAGTTACCTGTCCTGTCTTAGTAATCCAT

Basic information

species Arabidopsis thaliana
transcript AT5G38220.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124987450|gb|EL059906.1|EL059906
EST:     TGAGAGTTTTGTATCCGGTTAAACGTACCTATTGGTTTGACATTTACAAG                         AATATTGACAAGATCGGTGCAGTTACCTGTCCTGTCTTAGTAAT
genomic: TGAGAGTTTTGTATCCGGTTAAACGTACCTATTGGTTTGACATTTACAAGgtaatttagc ... tttgtttcagAATATTGACAAGATCGGTGCAGTTACCTGTCCTGTCTTAGTAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttgttctggttttcatgtgttcatgcttacacgcacaattctttgtttcagAATATTGACAAGATCGGTGCAGTTACCTGTCCTGTCTTAGTAATCCAT
                           tgcttac  putative branch site (score: 2)
                                          ttctttgtttc  putative PPT
                                        aattcttt  TA-rich tract