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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctccacttaagttgtgttattgcggtagttacggtctataatccaatgatgagtaggttataatagttctataatctcttctttggttttctttttccagGTATGATTACTCTGGTTATGGTCAGTCTACTGGAAAG

Basic information

species Arabidopsis thaliana
transcript AT5G38220.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163970155|gb|ES169453.1|ES169453
EST:     TTGAGCTTTTTTATCGAACTTAGTAATCGTCTCCGACTTAATCTCATGGG                         GTATGATTACTCTGGTTATGGTCAGTCTACTGG
genomic: TTGAGC-TTTTTATCGAACTTAGTAATCGTCTCCGACTTAATCTCATGGGgtaagtaact ... ctttttccagGTATGATTACTCTGGTTATGGTCAGTCTACTGG
EST: gi|19875872|gb|AU236703.1|AU236703
EST:     TTTGAGCTTTTTATCGAACTTAGTAATCGTCTCCGACTTAATCTCATGGG                         GTATGATTACTCTGGTTATGGTCAGTCTACTGGAAAG
genomic: TTTGAGCTTTTTATCGAACTTAGTAATCGTCTCCGACTTAATCTCATGGGgtaagtaact ... ctttttccagGTATGATTACTCTGGTTATGGTCAGTCTACTGGAAAG
EST: gi|163985472|gb|ES143077.1|ES143077
EST:     TTGAGTCTTTTTATCGAACTTAGTAATCGTCTCCGACTTAATCTCATGGG                         GTATGATTACTCTGGTTATGGTCAGTCTACTGG
genomic: TTGAG-CTTTTTATCGAACTTAGTAATCGTCTCCGACTTAATCTCATGGGgtaagtaact ... ctttttccagGTATGATTACTCTGGTTATGGTCAGTCTACTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatgagtaggttataatagttctataatctcttctttggttttctttttccagGTATGATTACTCTGGTTATGGTCAGTCTACTGGAAAG
                          taatctcttctttggt  CT-rich tract
            ttataatagttctata  TA-rich tract