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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttaacagtatcctgttttaacaatgcttaatatttgactggaatagggtgtctgatgtgtggatttacaatcacacgcagGATTTTTTCAAAAAACATGGTGTGGCTGTTATGACAATACGAGAGCTATTTGACTTCATAGTTGACCCGACAATTTCAGACGAAAATGTTGATAGCTATT

Basic information

species Arabidopsis thaliana
transcript AT5G37350.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G37350.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv17s0000g01390.t01 (Vitis vinifera), 3'ss of exon 9
--------------------------gtaagtgttaacagtatc--ctgttttaacaatgctt---aatatttgactggaatagggtgtctgatgtgtggatttacaatcacacgcagGATTTTTTCAAAAAACATGGTGTGGCTGTTATGACAATACGAGAGCTATTTGACTTCATAGTTGACCCGACAATTTCAGACGAAAATGTTGATAGCTATT
                          |   || | ||   | ||  |  ||  |||| ||  |   | ||||  |   ||  |   | |  |   |       |    |  || |||||||||||| |||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||| || || ||| | || ||    || |||   ||| 
gtatgttgtttctctgagatttcttggctggtttcaatgttttctacaattaaaacagtgactgtaactattaaatgtgacaattatattggtcattgaagcatttggtggcatgcagGATTTTTTTAAAAAACATGGTGTAGCTGTTATGACAATTCGAGAACTGTTTGATTTCATAGTTGATCCAACCATTACTGATGAGTCAGTGGATGATTATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaatatttgactggaatagggtgtctgatgtgtggatttacaatcacacgcagGATTTTTTCAAAAAACATGGTGTGGCTGTTATGACAATACGAGAGCTATTTGACTTCATAGTTGACCCGACAATTTCAGACGAAAATGTTGATAGCTATT
                        gtctgat  putative branch site (score: 4)
                                     atttacaat  TA-rich tract