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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcttattttctcatttagagggtcctgagtgtatcattgtaatactttacttagacctgatatgtcacgattaatctcttcttatttcagTTGATAATTCAAATGCGAGTATTATATCAGAAGTGCAAATTAGTGCATGGGGATCTCAGTGAGTATAACATACTTTATTTTGAA

Basic information

species Arabidopsis thaliana
transcript AT5G37350.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G37350.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA09G39750.1 (Glycine max), 3'ss of exon 7
-gtatgtcttattttctcatttagagggtcctgagtgtatcattgta-atactttacttagacctgatat-gtcacgatta--atctcttcttatttcagTTGATAATTCAAATGCGAGTATTATATCAGAAGTGCAAATTAGTGCATGGGGATCTCAGTGAGTATAACATACTTTATTTTGAA
  |   |   |     ||  ||  ||| | || || || | |  ||  || |  | | | ||     ||  ||    || |  | |  || || |||||| | || |||  ||||||   ||| |||||||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||| 
tcttgatggaaacccttctcttttaggtttctaagggtttgaaggtctattccatgcatcgaataattaaagttgaaatcatgagcattttttgtttcagATTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCATGGTGATCTCAGTGAATATAATATACTTTATTTTGAG

upper sequence: AT5G37350.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA18G46440.1 (Glycine max), 3'ss of exon 7
--------gtatgtcttattttctcatttagagggtcctgagtgtatcattgtaatactttacttagacctgatatgtcacgattaatctcttcttatttcagTTGATAATTCAAATGCGAGTATTATATCAGAAGTGCAAATTAGTGCATGGGGATCTCAGTGAGTATAACATACTTTATTTTGAA-
          |    |   |||    |||  | ||   |||| || |  ||   || | | |  ||       |      ||  | | |  || || |||||| | || |||  ||||||   ||| |||||||| |||||||| ||||| || ||||||||||| ||||| ||||||||||||||  
cttgatggaaacacttctgttttaggtttctaagggtttgagggtct--tttccatgcatcaaataattacagttgaaatcg--tgagcattttttgtttcagaTTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCACGGTGATCTCAGTGAATATAATATACTTTATTTTGAGG

upper sequence: AT5G37350.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv17s0000g01390.t01 (Vitis vinifera), 3'ss of exon 7
-gtatgtcttattttc---tcatttagagggtcctgagtgta--tcattgtaat-actttacttagacctgatatgtcacgattaatctcttcttatttcagTTGATAATTCAAATGCGAGTATTATATCAGAAGTGCAAATTAGTGCATGGGGATCTCAGTGAGTATAACATACTTTATTTTGAA
 |||  |  || |      | |||||  |   | | | | ||    ||| ||||   |||| | |  | |   |       |   |  ||||   |  |||| |||| ||   ||||||    |||||||||||||||||| | || ||||| || |||||||| |||||||||||||||||||| 
tgtacataatagtaatagatgatttattgtcactttattttagtctattttaattgttttagtgatgcttagaaaccttatacacacttctttcca--tcagATGATTATGGCAATGCGGACGTTATATCAGAAGTGCAAACTGGTACATGGAGACCTCAGTGAATATAACATACTTTATTTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtaatactttacttagacctgatatgtcacgattaatctcttcttatttcagTTGATAATTCAAATGCGAGTATTATATCAGAAGTGCAAATTAGTGCATGGGGATCTCAGTGAGTATAACATACTTTATTTTGAA
                                 gattaat  putative branch site (score: 3)
                                       tctcttcttatttc  CT-rich tract
     aatacttta  TA-rich tract