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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATAATTCAAATGCGAGTATTATATCAGAAGTGCAAATTAGTGCATGGGGATCTCAGTGAGTATAACATACTTTATTTTGAAgtgagttttgatttatctctacaagggtcacttatttgatcgtttcgtggcagcaaaacgaaacaaatataatgatattatcttgactttttcag

Basic information

species Arabidopsis thaliana
transcript AT5G37350.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G37350.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA09G39750.1 (Glycine max), 5'ss of exon 8
TTGATAATTCAAATGCGAGTATTATATCAGAAGTGCAAATTAGTGCATGGGGATCTCAGTGAGTATAACATACTTTATTTTGAAgtgagt-tttgatttatctctacaagggtcacttatttgatcgtttcgtggcagcaaaacgaaacaaatataatgatattatcttgactttttcag
 | || |||  ||||||   ||| |||||||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||        |||  |  |  |    ||| | |||  || || || |     ||| |   ||   ||||  |    |||| |     || ||||
ATTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCATGGTGATCTCAGTGAATATAATATACTTTATTTTGAGgtgaacaccccctttgccagtttatatttcattgattgaat-gtgtctttctgtcaatagttaattcatatggt--ctttatttgtcacttgtcag

upper sequence: AT5G37350.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA18G46440.1 (Glycine max), 5'ss of exon 8
TTGATAATTCAAATGCGAGTATTATATCAGAAGTGCAAATTAGTGCATGGGGATCTCAGTGAGTATAACATACTTTATTTTGAAgtgagttttgatttatctctacaagggtcacttatttgatcgtttcgtggcagcaaaacgaaacaaatataatgatattatcttgactttttcag
 | || |||  ||||||   ||| |||||||| |||||||| ||||| || ||||||||||| ||||| |||||||||||||| ||||       |||  |  |  |    ||| | |||| ||   |   || ||  |            |  |   ||||  |||| | || |   |
-TTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCACGGTGATCTCAGTGAATATAATATACTTTATTTTGAGGtgaacaccccttttccagtttatatttcattgatttaatgtctatttgtcaatag-----------ttaatcaatatgttctttatttgtcagg

upper sequence: AT5G37350.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv17s0000g01390.t01 (Vitis vinifera), 5'ss of exon 8
TTGATAATTCAAATGCGAGTATTATATCAGAAGTGCAAATTAGTGCATGGGGATCTCAGTGAGTATAACATACTTTATTTTGAAgtgagttttgatttatctctacaagggtcacttatttgat-cgtttcgtggcagcaaaacgaaacaaatataatgatattatcttgactttttcag
 |||| ||   ||||||    |||||||||||||||||| | || ||||| || |||||||| |||||||||||||||||||| ||  |  || ||   | |  |||  |   ||| | |  |   || |  |||       || || ||  ||||||    ||  ||    |||  |||
ATGATTATGGCAATGCGGACGTTATATCAGAAGTGCAAACTGGTACATGGAGACCTCAGTGAATATAACATACTTTATTTTGAGgtatgcatttatcgtttttcacattga--actgactacacatgtattatgg-------ac-aatcatttataatc---tttcctcctatttgacag