Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgttctcatgctacctgtgttgccagttgtttgcctatttataattaaaagagattctgcctgacattcttatttgctattaacattcaaacttgtctgacttcccatcatctttggtaaagGTTGAAGAGAAGCTCGAGTCAGGTCAAGGGAAGACACCCTTCCGTCGTTTATTCTCAAGATTTTGTACCCCAATATTTCTGGAG

Basic information

species Arabidopsis thaliana
transcript AT5G36290.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124868226|gb|EH952663.1|EH952663
EST:     CTTGGAGGTCTACTGATTCAAAGTCAAATCAGAAGAAAGAAATGGAGGAA                         GTTGAAGAGAAGCTCGAGTCA
genomic: CTTGGAGGTCTACTGATTCAAAGTCAAATCAGAAGAAAGAAATGGAGGAAgtaagttgtt ... tttggtaaagGTTGAAGAGAAGCTCGAGTCA
EST: gi|164055136|gb|EL968558.1|EL968558
EST:     GGAGGTCTACTGATTCAAAGTCAAATCAGAAGAAAGAAATGGAGGAA                         GTTGAAGAGAAGCTCGAGTCAGGTCAAGGGAAGACACCCTTCCGTCGTTTA
genomic: GGAGGTCTACTGATTCAAAGTCAAATCAGAAGAAAGAAATGGAGGAAgtaagttgtt ... tttggtaaagGTTGAAGAGAAGCTCGAGTCAGGTCAAGGGAAGACACCCTTCCGTCGTTTA
EST: gi|124921210|gb|EH994849.1|EH994849
EST:     CTTGGAGGTCTACTGATTCAAAGTCAAATCAGAAGAAAGAAATGGAGGAA                         GTTGAAGAGAAGCTCGAGTCAGGTCAAGGGAAGACACCCTTCCGTCGTTTA
genomic: CTTGGAGGTCTACTGATTCAAAGTCAAATCAGAAGAAAGAAATGGAGGAAgtaagttgtt ... tttggtaaagGTTGAAGAGAAGCTCGAGTCAGGTCAAGGGAAGACACCCTTCCGTCGTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttatttgctattaacattcaaacttgtctgacttcccatcatctttggtaaagGTTGAAGAGAAGCTCGAGTCAGGTCAAGGGAAGACACCCTTCCGTCGTTTATTCTCAAGATTTTGTACCCCAATATTTCTGGAG
                                 cttcccatcatcttt  CT-rich tract
 tattaacattcaaa  TA-rich tract