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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATATTGGTGCTCTTGGTTTGAATCTAGACCTTGATGCTACTGCTCCTAGTGTATTTGATGCTTTGTTTTCGAGTTTCTCGATGATACTTGTCACCGAGgttcgtgtgtgttgatatgattcaagcttagggtcaatttttagttttagtggttagagcttaatctttgtttcgtattatatgttag

Basic information

species Arabidopsis thaliana
transcript AT5G36290.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125295909|gb|EL309994.1|EL309994
EST:     TGTATTTGATGCTTTGTTTTCGAGTTTCTCGATGATACTTGTCACCGAG                         ATTGGGGATGGAACTTTTATAATAGCGGCATTGATGGCTATGCG
genomic: TGTATTTGATGCTTTGTTTTCGAGTTTCTCGATGATACTTGTCACCGAGgttcgtgtgt ... tatatgttagATTGGGGATGAAACTTTTATAATAGCGGCATTGATGGCTATGCG
EST: gi|124884709|gb|EH963611.1|EH963611
EST:     CTTGTCACCGAG                         ATTGGGGATGAAACTTTTATAATAGCGGCATTGATGGCTATGCGACATCCT
genomic: CTTGTCACCGAGgttcgtgtgt ... tatatgttagATTGGGGATGAAACTTTTATAATAGCGGCATTGATGGCTATGCGACATCCT
EST: gi|164113974|gb|ES005426.1|ES005426
EST:     CTTGTCACCGAG                         ATTGGGGATGAAACTTTTATAATAGCGGCATCGATGGCTATGCGACATCCT
genomic: CTTGTCACCGAGgttcgtgtgt ... tatatgttagATTGGGGATGAAACTTTTATAATAGCGGCATTGATGGCTATGCGACATCCT