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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttgaatctcgatctacttttttgcctttttcgaatctgaatatcttttgatagattctttatttgtttgatttcagGTTGGTACTGAACGAATTGGAGTTGATACTGTTGTAGACAATATTGGTGCTCTTGGTTTGAATCTAGACCTTGATGCTACTGCTCCTAGTGTATTTGATG

Basic information

species Arabidopsis thaliana
transcript AT5G36290.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163994543|gb|ES134971.1|ES134971
EST:     AGAGACAAGAATCTGAAGGATCTGGTAAAGAGCTTGGTCGTCGTGGAATG                         GTTGGTACTGAACGAATTGGAGTTGATACTGTTGTAGACAATATT
genomic: AGAGACAAGAATCTGAAGGATCTGGTAAAGAGCTTGGTCGTCGTGGAATGgtaattttga ... ttgatttcagGTTGGTACTGAACGAATTGGAGTTGATACTGTTGTAGACAATATT
EST: gi|124746334|gb|EH836672.1|EH836672
EST:     AGACAAGAATCTGAAGGATCTGGTAAAGAGCTTGGTCGTCGTGGAATG                         GTTGGTACTGAACGAATTGGAGTTGATACTGTTGTAGACAATATTGGTG
genomic: AGACAAGAATCTGAAGGATCTGGTAAAGAGCTTGGTCGTCGTGGAATGgtaattttga ... ttgatttcagGTTGGTACTGAACGAATTGGAGTTGATACTGTTGTAGACAATATTGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcctttttcgaatctgaatatcttttgatagattctttatttgtttgatttcagGTTGGTACTGAACGAATTGGAGTTGATACTGTTGTAGACAATATTGGTGCTCTTGGTTTGAATCTAGACCTTGATGCTACTGCTCCTAGTGTATTTGATG
                                 ttctttatttgttt  CT-rich tract
                                    tttatttgtttgattt  TA-rich tract