1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTAAGAAGTGCCTACGCTATCGCTAAGTTAAGAAAGACTGGGTATTCGAAGAATACGTTCTACATAGAAGCACTAGAGTTATACAAACAGgtattacttacataccttttgggtgtttttgtttgttttagtctcacagtagaatgtttaacaatcatcttgacttagctacccgggttttcttcag
species | Arabidopsis thaliana |
transcript | AT5G27395.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGTATTCGAAGAATACGTTCTACATAGAAGCACTAGAGTTATACAAACAG ATTAATATTCAGAEST: gi|116484011|gb|EG526603.1|EG526603
genomic: GGTATTCGAAGAATACGTTCTACATAGAAGCACTAGAGTTATACAAACAGgtattactta ... ttttcttcagATTAATATTCAGA
EST: GGTATTCGAAGAATACGTTCTACATAGAAGCACTAGAGTTATACAAACAG ATTAATATTCAGATGGCCAATGGTGAGAAGAAGACGATAAGGAAAAACGTAEST: gi|116484010|gb|EG526602.1|EG526602
genomic: GGTATTCGAAGAATACGTTCTACATAGAAGCACTAGAGTTATACAAACAGgtattactta ... ttttcttcagATTAATATTCAGATGGCCAATGGTGAGAAGAAGACGATAAGGAAAAACGTA
EST: GGTATTCGAAGAATACGTTCTACATAGAAGCACTAGAGTTATACAAACAG ATTAATATTCAGATGGCCAATGGTGAGAAGAAGACGATAAGGAAAAACGTAEST: gi|86015126|gb|DR310872.1|DR310872
genomic: GGTATTCGAAGAATACGTTCTACATAGAAGCACTAGAGTTATACAAACAGgtattactta ... ttttcttcagATTAATATTCAGATGGCCAATGGTGAGAAGAAGACGATAAGGAAAAACGTA
EST: GGTATTCGAAGAATACGTTCTACATAGAAGCACTAGAGTTATACAAACAG ATTAATATTCAGATGGCCAATGGTGAGAAGAAGACGATAAGGGAAAACGT
genomic: GGTATTCGAAGAATACGTTCTACATAGAAGCACTAGAGTTATACAAACAGgtattactta ... ttttcttcagATTAATATTCAGATGGCCAATGGTGAGAAGAAGACGATAAGGAAAAACGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAAGAAGTGCCTACGCTATCGCTAAGTTAAGAAAGACTGGGTATTCGAAGAATACGTTCTACATAGAAGCACTAGAGTTATACAAACAGgtattacttacataccttttgggtgtttttgtttgttttagtctcacagtagaatgtttaacaatcatcttgacttagctacccgggttttcttcag
- - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC